View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_8 (Length: 317)
Name: NF9373_8
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_8 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 53679491 - 53679794
Alignment:
| Q |
1 |
gttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcaat |
100 |
Q |
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| T |
53679491 |
gttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcggt |
53679590 |
T |
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| Q |
101 |
gttgattaagcaggtataattgaatttaaaatataattagattaaaaacgttaataataaagtacagattggaaataaatatgaaatgggagattgagaa |
200 |
Q |
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| T |
53679591 |
gttgattaagcaggtataattgaatttaaaatataattagattaaaaacgttaataataaattacagattggaaataaatatgaaatgggagattgagaa |
53679690 |
T |
|
| Q |
201 |
tgatgatttcatgaaaagtagaaatatgtgaagattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctatacacacag |
300 |
Q |
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| T |
53679691 |
tgacgatttcatgaaaagtagaaataagtgaagattgttaaatgaatggtatttggatttacatggaagagaagaaagggaagaagatctatacacacag |
53679790 |
T |
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| Q |
301 |
gttc |
304 |
Q |
| |
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|||| |
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| T |
53679791 |
gttc |
53679794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 19266212 - 19266145
Alignment:
| Q |
233 |
gattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctatacacacag |
300 |
Q |
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| T |
19266212 |
gattgttgaatgaatggaatttggatttacagagaagagaagaaaaggaagaagatccgtacacacag |
19266145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 32375255 - 32375198
Alignment:
| Q |
238 |
ttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctataca |
295 |
Q |
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||||||||||| | |||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
32375255 |
ttgaatgaatgatatttggatttacagagaagagaagaaaaggaagaagatccataca |
32375198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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