View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_low_11 (Length: 258)
Name: NF9373_low_11
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36292450 - 36292692
Alignment:
| Q |
1 |
agcattgagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggtatattactgatcaatcatgtttgataactaggttctctttccc |
100 |
Q |
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| T |
36292450 |
agcattgagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggtatattactgatcaatcatgtttgataactaggttctctttccc |
36292549 |
T |
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| Q |
101 |
ggactcataaaactcgtaagatgatgagttttagtctatcatagatccattcaactatttttcaaagacactcaccatgtgatgtccaatactcattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292550 |
ggactcataaaactcgtaagatgatgagttttagtctatcatagatccattcaactatttttcaaagacactcaccatgtgatgtccaatactcattgat |
36292649 |
T |
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| Q |
201 |
caaaatatgaaaatttcggaacccatcaagataccattcaacc |
243 |
Q |
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| T |
36292650 |
caaaatatgaaaatttcggaacccatcaagataccattcaacc |
36292692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36286480 - 36286537
Alignment:
| Q |
1 |
agcattgagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggta |
58 |
Q |
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|||||||||||||||||||||||| || |||||||| |||||||||||| ||||||| |
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| T |
36286480 |
agcattgagcatgattgaagatgctgagaataaaggtctcattactcctggaaaggta |
36286537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 36280982 - 36281035
Alignment:
| Q |
5 |
ttgagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggta |
58 |
Q |
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|||||||||||||||||||| || | ||||||| |||||||||||| ||||||| |
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| T |
36280982 |
ttgagcatgattgaagatgctgagagtaaaggcctcattactcctggaaaggta |
36281035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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