View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_low_2 (Length: 538)
Name: NF9373_low_2
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_low_2 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 57 - 522
Target Start/End: Complemental strand, 37757501 - 37757036
Alignment:
| Q |
57 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
156 |
Q |
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| T |
37757501 |
gattatgggaagccgtggattcggtgcgacgaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgtt |
37757402 |
T |
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| Q |
157 |
gtagttgtaaggtatccggaggagagtaatggcggcggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
256 |
Q |
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| T |
37757401 |
gtagttgtaaggtatccggaggagagtaatggcggtggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaac |
37757302 |
T |
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| Q |
257 |
atgaagatgagtatcatgatgctgatgatgatgaacacaaaggtttaatcttgtaacttttttaactctaacttttaaacttgcaacgcaagcattataa |
356 |
Q |
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| T |
37757301 |
atgaagatgagtatcatgatgctgatgatgatgaacacaaaggtttaatcttttaacttttttaactctaacttttaaacttgcaacgcaagcattataa |
37757202 |
T |
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| Q |
357 |
tttgttattttttcatgaaatgatgaatatttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaatatg |
456 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37757201 |
tttgatattttttcatgaaatgatgaatatttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaagatg |
37757102 |
T |
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| Q |
457 |
gttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattatttta |
522 |
Q |
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| T |
37757101 |
gttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattatttta |
37757036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1717 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 460 - 397
Alignment:
| Q |
101 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
164 |
Q |
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| T |
460 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 706 - 643
Alignment:
| Q |
101 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
164 |
Q |
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| T |
706 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 523
Target Start/End: Complemental strand, 47552932 - 47552840
Alignment:
| Q |
431 |
tatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattattttat |
523 |
Q |
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| T |
47552932 |
tatgtggtagttattttgaaaagacagttataaagtaggcctacatagtaagatgatgagttcctattggatgacggtgtaaaactattttat |
47552840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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