View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9373_low_4 (Length: 436)
Name: NF9373_low_4
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 109 - 295
Target Start/End: Complemental strand, 42025245 - 42025044
Alignment:
| Q |
109 |
tatttttattcttttgcagttgccatttttacagtttaatgctatattttatcaattcta--------------ttaagtggttgatgaagattaataaa |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42025245 |
tatttttattcttttgtagttgccatttttacagtttaaagctatattttatcaattctaccttatcaattctattaagtggttgatgaagattaataaa |
42025146 |
T |
|
| Q |
195 |
attgaaaagtttcagtacccttgtcgctcataatagcaagccatattaaat-aaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42025145 |
attgaaaagttttagtacccttgtcgctcataatagcaagccgtattaaataaaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
42025046 |
T |
|
| Q |
294 |
tt |
295 |
Q |
| |
|
|| |
|
|
| T |
42025045 |
tt |
42025044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 42024985 - 42024921
Alignment:
| Q |
356 |
cttggattttttgtttctgtactagaagatctctttgaagatgacattctgtgatacgtgatgtg |
420 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42024985 |
cttggattttttgtttctgtgctagaagatctctttgaagatgacattctgtgatacgtgatgtg |
42024921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 42025633 - 42025591
Alignment:
| Q |
70 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42025633 |
tgtggtgatagtgcaagtatatgtgtgcatatatactagtatt |
42025591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 1252839 - 1252797
Alignment:
| Q |
70 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1252839 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
1252797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University