View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9373_low_5 (Length: 362)

Name: NF9373_low_5
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9373_low_5
NF9373_low_5
[»] chr4 (4 HSPs)
chr4 (17-350)||(23110294-23110627)
chr4 (17-348)||(23073736-23074067)
chr4 (17-345)||(23078347-23078675)
chr4 (17-52)||(23113775-23113810)
[»] chr2 (1 HSPs)
chr2 (17-58)||(41081120-41081161)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 23110294 - 23110627
Alignment:
Q  17 accaagagtgttacatattagattaccaatgttacaagccaacacaagatagaatgctagggacagagttttgtggcaaagtaatcagaagaacaaaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  23110294 accaagagtgttacatattagattaccaatgttacaagccaacacaagatagaatgctagggacagagttttgtggcaaagtaatcacaagaacacaaaa 23110393  T
Q  117 tttgggtctagatgagtacaaatttctcctcaaagctattgtaagttgtggtattggcgaacaaacttacgccccaagaaacgtctttgaaggccgcgaa 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23110394 tttgggtctaaatgagtacaaatttctcctcaaagctattgtaagttgtggtattggcgaacaaacttacgccccaagaaacgtctttgaaggccgcgaa 23110493  T
Q  217 gcatccccaacattgaaagacgggatctcagagatggaagaattttttgacgacagcattgcaaaacttctatcaaggtcagggatttgcccttccaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23110494 gcatccccaacattgaaagacgggatctcagagatggaagaattttttgacgacagcattgcaaaacttctatcaaggtcagggatttgcccttccgaaa 23110593  T
Q  317 ttgacgttcttgtcgtcaacatcgcaatgctctc 350  Q
    |||| |||||||||||||||||||||||||||||    
T  23110594 ttgatgttcttgtcgtcaacatcgcaatgctctc 23110627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 23074067 - 23073736
Alignment:
Q  17 accaagagtgttacatattagattaccaatgttacaagccaacacaagatagaatgctagggacagagttttgtggcaaagtaatcagaagaacaaaaaa 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23074067 accaagagtgctacatattagattaccaatgttacaagccaacacaagatagaatgctagggacagagttttgtggcaaaataatcagaagaacaaaaaa 23073968  T
Q  117 tttgggtctagatgagtacaaatttctcctcaaagctattgtaagttgtggtattggcgaacaaacttacgccccaagaaacgtctttgaaggccgcgaa 216  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||  || |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  23073967 tttgggtctagatgagtacaaatttctcctcaaagccgttgtaagttccggaattggcgaacaaacttacgcaccaagaaatgtctttgaaggccgcgaa 23073868  T
Q  217 gcatccccaacattgaaagacgggatctcagagatggaagaattttttgacgacagcattgcaaaacttctatcaaggtcagggatttgcccttccaaaa 316  Q
     |||| |||||| |||| ||||||||||| ||||||||||| |||||  ||||||||||||| ||||| ||| | || |||| ||||| ||||||| |||    
T  23073867 tcatcaccaacactgaacgacgggatctctgagatggaagagtttttcaacgacagcattgcgaaactcctagctagatcagcgatttccccttccgaaa 23073768  T
Q  317 ttgacgttcttgtcgtcaacatcgcaatgctc 348  Q
    | ||| ||||||||||||||||| ||||||||    
T  23073767 tcgacattcttgtcgtcaacatctcaatgctc 23073736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 23078675 - 23078347
Alignment:
Q  17 accaagagtgttacatattagattaccaatgttacaagccaacacaagatagaatgctagggacagagttttgtggcaaagtaatcagaagaacaaaaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  23078675 accaagagtgttacatattagattaccaatgttacaagccaacacaagatagaatgctagggactgagttttgtggcaaattaatcagaagaacagaaaa 23078576  T
Q  117 tttgggtctagatgagtacaaatttctcctcaaagctattgtaagttgtggtattggcgaacaaacttacgccccaagaaacgtctttgaaggccgcgaa 216  Q
    |||||||||| |||||||||| ||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23078575 tttgggtctaaatgagtacaagtttctgctcaaatccattgtaagttgcggcattggcgaacaaacttacgccccaagaaatgtcattgaaggccgcgaa 23078476  T
Q  217 gcatccccaacattgaaagacgggatctcagagatggaagaattttttgacgacagcattgcaaaacttctatcaaggtcagggatttgcccttccaaaa 316  Q
    ||||| |||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||  |||| ||||  | || ||||||| |||    
T  23078475 gcatcaccaacgctgaacgacgggatctcagagatggaagagtttttcgacgacagcattgcaaaactccttgcaagatcagctacttccccttccgaaa 23078376  T
Q  317 ttgacgttcttgtcgtcaacatcgcaatg 345  Q
    | || |||||||| ||||||||| |||||    
T  23078375 tcgatgttcttgttgtcaacatctcaatg 23078347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 23113810 - 23113775
Alignment:
Q  17 accaagagtgttacatattagattaccaatgttaca 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113810 accaagagtgttacatattagattaccaatgttaca 23113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 41081161 - 41081120
Alignment:
Q  17 accaagagtgttacatattagattaccaatgttacaagccaa 58  Q
    |||||||||||||||||||| | || ||||||||||||||||    
T  41081161 accaagagtgttacatattaaactatcaatgttacaagccaa 41081120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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