View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9373_low_7 (Length: 350)

Name: NF9373_low_7
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9373_low_7
NF9373_low_7
[»] chr7 (26 HSPs)
chr7 (155-336)||(2266774-2266955)
chr7 (13-96)||(18371424-18371509)
chr7 (16-99)||(21505413-21505496)
chr7 (21-102)||(11658373-11658456)
chr7 (13-96)||(31659622-31659708)
chr7 (49-97)||(7500454-7500503)
chr7 (13-98)||(22630468-22630555)
chr7 (45-100)||(17782601-17782658)
chr7 (50-98)||(127335-127384)
chr7 (13-70)||(18372473-18372530)
chr7 (20-100)||(48933664-48933745)
chr7 (45-98)||(3227642-3227697)
chr7 (45-98)||(7501900-7501955)
chr7 (45-94)||(17781663-17781714)
chr7 (50-98)||(21508457-21508505)
chr7 (13-98)||(42886302-42886389)
chr7 (45-93)||(128649-128699)
chr7 (49-96)||(43899448-43899495)
chr7 (26-97)||(20163585-20163658)
chr7 (22-97)||(31661034-31661111)
chr7 (17-98)||(597304-597383)
chr7 (22-98)||(30439383-30439460)
chr7 (45-99)||(31949850-31949906)
chr7 (45-98)||(31949320-31949375)
chr7 (51-96)||(47525421-47525468)
chr7 (15-96)||(48934921-48935004)
[»] chr3 (34 HSPs)
chr3 (11-98)||(12700173-12700260)
chr3 (13-97)||(54540806-54540892)
chr3 (13-98)||(7758400-7758487)
chr3 (13-98)||(7267642-7267728)
chr3 (17-99)||(19984846-19984930)
chr3 (13-98)||(534497-534584)
chr3 (13-102)||(22776828-22776919)
chr3 (21-102)||(51038814-51038897)
chr3 (13-97)||(54539754-54539840)
chr3 (21-98)||(34019169-34019246)
chr3 (11-102)||(12703514-12703606)
chr3 (16-97)||(29932718-29932800)
chr3 (16-97)||(29981872-29981954)
chr3 (13-96)||(51037536-51037620)
chr3 (17-98)||(19986090-19986175)
chr3 (45-105)||(47615596-47615658)
chr3 (13-96)||(53901404-53901487)
chr3 (13-100)||(29931222-29931311)
chr3 (13-100)||(29980376-29980465)
chr3 (16-98)||(23769855-23769939)
chr3 (22-74)||(6170296-6170348)
chr3 (22-74)||(6249633-6249685)
chr3 (13-98)||(8875904-8875991)
chr3 (45-98)||(47609695-47609750)
chr3 (45-102)||(47610628-47610687)
chr3 (21-99)||(7268851-7268930)
chr3 (13-95)||(8456479-8456562)
chr3 (24-96)||(49216247-49216321)
chr3 (16-75)||(55192014-55192073)
chr3 (13-71)||(31645000-31645058)
chr3 (22-97)||(46721245-46721322)
chr3 (45-96)||(47614185-47614238)
chr3 (51-98)||(11671395-11671443)
chr3 (11-102)||(28262187-28262279)
[»] chr1 (36 HSPs)
chr1 (13-98)||(24422798-24422885)
chr1 (13-98)||(11437215-11437302)
chr1 (17-93)||(39153136-39153214)
chr1 (20-101)||(14999280-14999362)
chr1 (13-96)||(39699783-39699867)
chr1 (21-97)||(52274967-52275045)
chr1 (17-97)||(45157229-45157310)
chr1 (15-98)||(45149989-45150073)
chr1 (13-98)||(51685781-51685868)
chr1 (13-97)||(11436041-11436127)
chr1 (21-97)||(33088641-33088719)
chr1 (13-105)||(35067018-35067112)
chr1 (16-74)||(43060025-43060083)
chr1 (13-96)||(51684366-51684451)
chr1 (44-97)||(35594216-35594271)
chr1 (13-101)||(36613920-36614010)
chr1 (45-97)||(52827346-52827400)
chr1 (13-100)||(12389997-12390086)
chr1 (19-98)||(39151929-39152010)
chr1 (13-96)||(45148581-45148665)
chr1 (22-96)||(46066525-46066599)
chr1 (22-83)||(43058800-43058861)
chr1 (13-93)||(43378729-43378810)
chr1 (22-74)||(24426100-24426152)
chr1 (45-96)||(39222521-39222575)
chr1 (45-96)||(41364829-41364881)
chr1 (13-99)||(7675475-7675562)
chr1 (13-99)||(7983047-7983134)
chr1 (42-100)||(25652711-25652770)
chr1 (42-102)||(41366175-41366237)
chr1 (22-100)||(16290089-16290170)
chr1 (16-74)||(30249509-30249567)
chr1 (19-99)||(7674525-7674605)
chr1 (45-105)||(50680323-50680384)
chr1 (50-96)||(50681657-50681705)
chr1 (21-98)||(23980490-23980569)
[»] chr4 (35 HSPs)
chr4 (16-98)||(26421641-26421724)
chr4 (15-104)||(17382985-17383075)
chr4 (15-100)||(17388229-17388315)
chr4 (11-99)||(49308042-49308130)
chr4 (13-98)||(1835118-1835205)
chr4 (16-93)||(12129626-12129705)
chr4 (16-96)||(31601004-31601086)
chr4 (13-98)||(1963194-1963281)
chr4 (45-98)||(5526174-5526228)
chr4 (21-98)||(8757673-8757751)
chr4 (46-97)||(10470545-10470598)
chr4 (13-93)||(8155741-8155822)
chr4 (13-98)||(1290214-1290301)
chr4 (15-96)||(1834119-1834202)
chr4 (16-93)||(8758856-8758935)
chr4 (13-98)||(25685838-25685925)
chr4 (15-98)||(55603549-55603633)
chr4 (46-106)||(25684925-25684986)
chr4 (21-97)||(31599788-31599866)
chr4 (45-96)||(10471436-10471489)
chr4 (13-94)||(19750591-19750673)
chr4 (13-94)||(19789133-19789215)
chr4 (13-98)||(21177995-21178081)
chr4 (13-100)||(52491623-52491712)
chr4 (45-97)||(13386580-13386635)
chr4 (45-98)||(48780246-48780301)
chr4 (50-93)||(35934347-35934390)
chr4 (13-93)||(35935549-35935631)
chr4 (21-96)||(1964465-1964542)
chr4 (13-75)||(21539087-21539149)
chr4 (21-98)||(49306773-49306851)
chr4 (45-74)||(5525383-5525412)
chr4 (17-74)||(37728585-37728642)
chr4 (14-96)||(50909690-50909774)
chr4 (13-96)||(10447006-10447092)
[»] chr2 (31 HSPs)
chr2 (16-102)||(18300743-18300829)
chr2 (15-102)||(36449772-36449861)
chr2 (13-99)||(18797243-18797332)
chr2 (21-98)||(18904365-18904444)
chr2 (13-98)||(41879228-41879315)
chr2 (15-74)||(32739647-32739706)
chr2 (13-99)||(38840509-38840597)
chr2 (13-98)||(7899898-7899985)
chr2 (16-97)||(22587973-22588055)
chr2 (22-98)||(18906012-18906090)
chr2 (17-97)||(802611-802692)
chr2 (44-96)||(21837070-21837122)
chr2 (45-97)||(21837303-21837355)
chr2 (23-98)||(36450947-36451023)
chr2 (44-95)||(13030293-13030344)
chr2 (17-70)||(810801-810854)
chr2 (13-99)||(7898688-7898776)
chr2 (20-98)||(16446152-16446232)
chr2 (13-93)||(8535672-8535752)
chr2 (22-74)||(11258836-11258888)
chr2 (11-96)||(18299373-18299460)
chr2 (13-98)||(38839240-38839327)
chr2 (50-98)||(11938841-11938891)
chr2 (21-97)||(22848190-22848268)
chr2 (22-98)||(23869560-23869637)
chr2 (45-96)||(1034517-1034570)
chr2 (16-96)||(41878092-41878176)
chr2 (20-98)||(18868922-18869002)
chr2 (17-95)||(26545541-26545621)
chr2 (20-93)||(13567975-13568050)
chr2 (16-96)||(24476863-24476943)
[»] chr6 (25 HSPs)
chr6 (20-98)||(16704520-16704600)
chr6 (13-93)||(26575070-26575150)
chr6 (44-97)||(8660250-8660305)
chr6 (13-104)||(14823591-14823685)
chr6 (22-98)||(6842308-6842386)
chr6 (45-96)||(8822841-8822894)
chr6 (45-99)||(7316342-7316398)
chr6 (15-99)||(10784589-10784676)
chr6 (13-99)||(27437825-27437913)
chr6 (13-98)||(14822358-14822445)
chr6 (13-93)||(1829619-1829701)
chr6 (45-97)||(3721611-3721665)
chr6 (46-98)||(3722556-3722610)
chr6 (45-105)||(8821864-8821926)
chr6 (49-96)||(16703570-16703617)
chr6 (17-98)||(6840192-6840273)
chr6 (45-98)||(8659263-8659318)
chr6 (44-96)||(7314880-7314934)
chr6 (42-94)||(26717129-26717183)
chr6 (49-100)||(34834631-34834684)
chr6 (40-98)||(16415576-16415636)
chr6 (13-73)||(12350823-12350882)
chr6 (45-104)||(27318307-27318367)
chr6 (45-100)||(27322116-27322172)
chr6 (16-96)||(30495717-30495797)
[»] scaffold0019 (2 HSPs)
scaffold0019 (11-96)||(60090-60177)
scaffold0019 (11-95)||(61473-61559)
[»] chr5 (27 HSPs)
chr5 (13-98)||(25523067-25523154)
chr5 (13-98)||(28538674-28538761)
chr5 (11-97)||(19752911-19752998)
chr5 (17-93)||(24332916-24332994)
chr5 (16-96)||(22940641-22940723)
chr5 (13-96)||(25056397-25056482)
chr5 (45-98)||(5777899-5777952)
chr5 (13-99)||(40255688-40255776)
chr5 (13-98)||(16650871-16650958)
chr5 (16-97)||(33158097-33158180)
chr5 (16-99)||(33160305-33160390)
chr5 (21-99)||(18154491-18154570)
chr5 (11-99)||(19754144-19754235)
chr5 (16-96)||(20214196-20214277)
chr5 (13-97)||(21835040-21835125)
chr5 (50-105)||(5730432-5730490)
chr5 (13-98)||(18486918-18487005)
chr5 (21-97)||(36486512-36486590)
chr5 (13-101)||(25055407-25055497)
chr5 (51-98)||(5778890-5778939)
chr5 (15-98)||(20216781-20216866)
chr5 (24-74)||(34893689-34893739)
chr5 (21-74)||(28539844-28539897)
chr5 (13-74)||(36485324-36485385)
chr5 (22-83)||(38834102-38834162)
chr5 (15-96)||(1796054-1796137)
chr5 (45-102)||(18485132-18485191)
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-98)||(5457-5541)
[»] chr8 (25 HSPs)
chr8 (13-101)||(5513977-5514066)
chr8 (13-97)||(12351920-12352006)
chr8 (13-97)||(22221380-22221466)
chr8 (13-97)||(22227722-22227808)
chr8 (13-102)||(12353377-12353466)
chr8 (21-97)||(32207349-32207425)
chr8 (45-100)||(10007811-10007868)
chr8 (13-96)||(22220388-22220473)
chr8 (13-97)||(8388463-8388547)
chr8 (22-98)||(8389714-8389792)
chr8 (24-93)||(29968364-29968434)
chr8 (23-97)||(1823551-1823627)
chr8 (13-74)||(1824094-1824155)
chr8 (23-97)||(1857996-1858072)
chr8 (13-74)||(1858539-1858600)
chr8 (13-98)||(11282006-11282093)
chr8 (13-97)||(43661839-43661925)
chr8 (45-96)||(10006344-10006397)
chr8 (16-74)||(18970934-18970992)
chr8 (45-96)||(24483143-24483196)
chr8 (13-98)||(30568885-30568971)
chr8 (13-74)||(11287800-11287861)
chr8 (22-98)||(24122881-24122958)
chr8 (22-103)||(29043391-29043474)
chr8 (13-94)||(43661267-43661350)
[»] scaffold0302 (1 HSPs)
scaffold0302 (15-98)||(17468-17553)
[»] scaffold1303 (1 HSPs)
scaffold1303 (13-99)||(1436-1524)
[»] scaffold0093 (2 HSPs)
scaffold0093 (13-95)||(2481-2564)
scaffold0093 (13-95)||(7104-7187)
[»] scaffold0186 (1 HSPs)
scaffold0186 (50-96)||(23081-23127)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-99)||(49449-49537)
[»] scaffold0632 (1 HSPs)
scaffold0632 (21-98)||(3332-3410)
[»] scaffold0112 (1 HSPs)
scaffold0112 (13-101)||(37143-37232)
[»] scaffold0586 (1 HSPs)
scaffold0586 (13-98)||(6341-6428)
[»] scaffold0369 (1 HSPs)
scaffold0369 (22-102)||(13187-13267)
[»] scaffold0320 (1 HSPs)
scaffold0320 (13-98)||(19486-19573)
[»] scaffold0049 (1 HSPs)
scaffold0049 (13-102)||(7431-7522)
[»] scaffold2034 (2 HSPs)
scaffold2034 (21-96)||(233-310)
scaffold2034 (15-75)||(996-1056)
[»] scaffold0321 (1 HSPs)
scaffold0321 (13-94)||(18730-18813)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 155 - 336
Target Start/End: Original strand, 2266774 - 2266955
Alignment:
Q  155 ctagaactatggtgacaatcgcgactgactctcaccatcgactccctcaagaaaacccacatctggaagcgtgtctctacatctcacgaaagtgataata 254  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2266774 ctagatctatggtgataatcgcgaatgactctcaccatcgactccctcaagaaaacccacatctggaagcgtgtctctacatctcacgaaagtgataata 2266873  T
Q  255 gcgtttctgagtagaaaccactcagagtttcttccactcatctctaatccatggaatctccatttgtcaccttcgatctgtg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2266874 gcgtttctgagtagaaaccactcagagtttcttccactcatctctaatccatggaatctccatttgtcaccttcgatctgtg 2266955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 18371509 - 18371424
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| || || ||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||    
T  18371509 tagggggccaaaattgtagtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcc 18371424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 21505496 - 21505413
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcctat 99  Q
    ||||||||||||||||||| || | ||  |||| |||||| |||| |||||||||||||  |||||||||||||||||||||||    
T  21505496 ggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaaagttagggggaaaagtgcactttagcctat 21505413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 11658456 - 11658373
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctatatt 102  Q
    |||||||||||||| || ||||| ||||  ||||||||| |||||||||||||||   |||||||||||| |||||||||||||    
T  11658456 caaaattgtagtttttgtacatagggggctaaaattgcatgtttttgaaagttaaggggggaaaagtgcaatttagcctatatt 11658373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 31659708 - 31659622
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg---aaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| || || || ||||||||||||| ||||||||||||||||  |||   |||||||||||||||||    
T  31659708 tagggggccaaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggggggtaaaagtgcactttagcc 31659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 7500503 - 7500454
Alignment:
Q  49 tcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  7500503 tcaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcct 7500454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 22630468 - 22630555
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || |  || |||| |||||||||||||||||||||||||    ||||||||||||||||||||||    
T  22630468 tagggggctaaaattgtagtttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcactttagccta 22630555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 17782601 - 17782658
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctata 100  Q
    |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  17782601 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctata 17782658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 127384 - 127335
Alignment:
Q  50 caaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||    
T  127384 caaaattgcaagtttttgaaagttaggggggaaaagtgcactttagccta 127335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 18372473 - 18372530
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaa 70  Q
    ||||||| |||||||||||||| || || || |||| |||||||||||||||||||||    
T  18372473 tagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 18372530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 48933745 - 48933664
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt-aatgggaaaagtgcactttagcctata 100  Q
    ||||||||||||||| ||   ||||||| |||||||||||||||||| ||| || || ||||||||| || |||||||||||    
T  48933745 tcaaaattgtagtttttgtttataagggatcaaaattgcaagtttttaaaatttaaaagggaaaagtacattttagcctata 48933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 3227642 - 3227697
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||| |||||||||||||||||||||||||    ||||||||||||||||||||||    
T  3227642 ggggccaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagccta 3227697  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 7501900 - 7501955
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  7501900 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccta 7501955  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 17781714 - 17781663
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttag 94  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  17781714 ggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttag 17781663  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 21508457 - 21508505
Alignment:
Q  50 caaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    |||||||| || |||||||||||||| ||||||| ||||||||||||||    
T  21508457 caaaattgaaactttttgaaagttaaggggaaaaatgcactttagccta 21508505  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 42886302 - 42886389
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || |  || |||||||||||||||| |||||||||||||  | | ||||||||||||||| ||||    
T  42886302 tagggggctaaaattgtagtttttgtatttagggggtcaaaattgcaaatttttgaaagttaggaggagaaaagtgcactttaaccta 42886389  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 128649 - 128699
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcacttta 93  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  128649 ggggtcaaaattgcaaatttttgaaagttatggtgggaaaagtgcacttta 128699  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 43899495 - 43899448
Alignment:
Q  49 tcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||||||||||| || |||| || |||||||||    
T  43899495 tcaaaattgcaagtttttgaaagttaagggaaaaaatgtactttagcc 43899448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 20163585 - 20163658
Alignment:
Q  26 ttgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    ||||||||| || ||||| || | |||||||||||||||||||||||||  |  ||| ||||||||||||||||    
T  20163585 ttgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggggtggagaagtgcactttagcct 20163658  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 31661034 - 31661111
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcct 97  Q
    |||||| |||||| || || ||| ||||||||||||||| ||||||||||||  |  ||| |||||||||||||||||    
T  31661034 aaaattatagtttttgtacgtaaagggtcaaaattgcaaatttttgaaagttagagaggggaaagtgcactttagcct 31661111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 597304 - 597383
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||| || || || | | |||||||| |||||||||||||||| | ||||||| ||||| ||||||||    
T  597304 gggtcaaaattgtagtttttgtacttatgcg-tcaaaatttcaagtttttgaaagtt-aggggaaaaatgcacattagccta 597383  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 30439383 - 30439460
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggga-aaagtgcactttagccta 98  Q
    ||||||||||||| || ||||| |   ||||||| | || |||||||||||||| |||| ||||||||||||||||||    
T  30439383 aaaattgtagtttttgaacataggaaatcaaaatcgtaactttttgaaagttaaggggagaaagtgcactttagccta 30439460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 31949850 - 31949906
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctat 99  Q
    |||| |||||||||||||||||||||||||    ||||| |||||||||||||||||    
T  31949850 ggggccaaaattgcaagtttttgaaagttagggggggaagagtgcactttagcctat 31949906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 31949375 - 31949320
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    |||| ||||||||||||||||||||| |||  |  |||||||||||||||||||||    
T  31949375 ggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagccta 31949320  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 47525421 - 47525468
Alignment:
Q  51 aaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcc 96  Q
    |||||||||||||||||||||||  |  ||||||||||||||||||||    
T  47525421 aaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 47525468  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 48934921 - 48935004
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcc 96  Q
    |||| |||||||| |||||| || || ||  ||||||||||| |||||||||||||||||  |  |||||| ||||||||||||    
T  48934921 ggggatcaaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcactttagcc 48935004  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 12700260 - 12700173
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||||| || || || |||| |||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  12700260 catagggggtcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaagtgcactttagccta 12700173  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 54540806 - 54540892
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcct 97  Q
    ||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  54540806 tagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcct 54540892  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 7758487 - 7758400
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || || || ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  7758487 tagggggcaaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagccta 7758400  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 7267728 - 7267642
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || || || |||| ||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  7267728 tagggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttaaccta 7267642  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 19984930 - 19984846
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctat 99  Q
    |||||||||||||||||| || ||||| |||| ||||||||||||||||||||| |||    |||||||||||||||||||||||    
T  19984930 gggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagtgcactttagcctat 19984846  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 534584 - 534497
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || ||||| | |||||||||||||||||||||| |||||  |||  |||||||||||||||||||    
T  534584 tagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagtttttgagagttagaggggaaaaagtgcactttagccta 534497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22776828 - 22776919
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctatatt 102  Q
    ||||||| |||||||||||||| || ||||| |||| ||||||||||| ||| |||||||||  |  |||||||||||||||||||||||||    
T  22776828 tagggggccaaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcactttagcctatatt 22776919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 51038814 - 51038897
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctatatt 102  Q
    |||||||||||||| ||  |||| |||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||||||    
T  51038814 caaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcactttagcctatatt 51038897  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 54539840 - 54539754
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    |||||| ||||||||||||||| || |  || ||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  54539840 taggggatcaaaattgtagtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcct 54539754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 34019169 - 34019246
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    |||||||||||| | || || || ||||||||||||||||||||||||||||||| ||||||| || |||||| ||||    
T  34019169 caaaattgtagtgtttgtacctagggggtcaaaattgcaagtttttgaaagttaaggggaaaaatgtactttacccta 34019246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 12703514 - 12703606
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctatatt 102  Q
    ||||||||| |||||||||||||| || || || |||| ||||||| ||| ||||||||||||| | || |||||||||||||||||| ||||    
T  12703514 catagggggccaaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgcactttagcctttatt 12703606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 29932718 - 29932800
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||| || || || |||| ||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  29932718 ggggtcaaaattgtagtttttgtactta-ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcct 29932800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 29981872 - 29981954
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||| || || || |||| ||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  29981872 ggggtcaaaattgtagtttttgtactta-ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcct 29981954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 51037620 - 51037536
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagcc 96  Q
    |||||||  ||||||||||||| ||  ||||  ||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  51037620 tagggggctaaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaagggagaaaagtgcactttagcc 51037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 19986090 - 19986175
Alignment:
Q  17 gggtcaaaattgtagtttatgcacata--aggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||| |  |||||  ||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||||    
T  19986090 gggtcaaaattgtagtttttatacataggaggggccaaaattgcaagtttttgaaacttaagaggggaaaagtgcactttagccta 19986175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 47615596 - 47615658
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctatattatt 105  Q
    |||| ||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  47615596 ggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctaaattatt 47615658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 53901404 - 53901487
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||||| ||| |||||||||| || || ||||| ||||||||||||| ||||| ||| |||  ||||||||||||||||||||    
T  53901404 tagggggccaacattgtagtttttgtacttaaggagtcaaaattgcaacttttttaaacttagggggaaaagtgcactttagcc 53901487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 29931311 - 29931222
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctata 100  Q
    ||||||| |||||||||||||| || |  || ||||  ||||||||||||||||||||||||  |  |||||||||||||||||||||||    
T  29931311 tagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctata 29931222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 29980465 - 29980376
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctata 100  Q
    ||||||| |||||||||||||| || |  || ||||  ||||||||||||||||||||||||  |  |||||||||||||||||||||||    
T  29980465 tagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctata 29980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 23769939 - 23769855
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||| ||||||||  || | |||||||||| || ||||||||||| |  |||||||||||||| ||||||    
T  23769939 ggggtcaaaattgtagtttttgcacatagaggattaaaattgcaacttgttgaaagttaagggtggaaaagtgcacttcagccta 23769855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 6170348 - 6170296
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||| ||| || || |||||| ||||||||||||||||||||||||||    
T  6170348 aaaattgtaatttttgtacttaagggatcaaaattgcaagtttttgaaagtta 6170296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 6249685 - 6249633
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||| || || |||||| | ||||||||||||||||||||||||    
T  6249685 aaaattgtagtttttgtacttaagggattaaaattgcaagtttttgaaagtta 6249633  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 8875991 - 8875904
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || ||||||||||  |||||||||  |||||  || |||| ||  ||||||||||||||||||||    
T  8875991 tagggggccaaaattgtagtttttgtacataaggggctaaaattgcagctttttcgaacttaaggggtgaaaagtgcactttagccta 8875904  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 47609750 - 47609695
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||||||||||||||    |||||||||||| |||||||||    
T  47609750 ggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcattttagccta 47609695  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 47610628 - 47610687
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctatatt 102  Q
    |||| ||||||||||||||||||||||||  |  ||||||||||||||||| ||||||||    
T  47610628 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttaacctatatt 47610687  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 7268851 - 7268930
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctat 99  Q
    |||||||||||||| |  || || | || |||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  7268851 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttaacctat 7268930  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 8456562 - 8456479
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagc 95  Q
    ||||||| |||||||||||||| || |  || |||  ||||||||||||||||||||| |||  ||| ||||||||||||||||    
T  8456562 tagggggccaaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcactttagc 8456479  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 49216321 - 49216247
Alignment:
Q  24 aattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    ||||||||||| || ||||| |||||||||||||||| ||||||||| |||     |||||||||||||||||||    
T  49216321 aattgtagtttttgtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagtgcactttagcc 49216247  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 55192014 - 55192073
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa 75  Q
    |||| |||||||||||||| || || ||  ||| ||||||||||||||||||||||||||    
T  55192014 ggggccaaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaagttaa 55192073  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 31645058 - 31645000
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaag 71  Q
    |||| ||| ||||||||||||| ||||| || |||| |||||||| |||||||||||||    
T  31645058 taggaggttaaaattgtagtttttgcacttagggggccaaaattgtaagtttttgaaag 31645000  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 46721245 - 46721322
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagcct 97  Q
    ||||||||||||| || ||||| ||||| ||||| |||| ||||| |||||||  ||  |||||||||||||||||||    
T  46721245 aaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttagggggagaaaagtgcactttagcct 46721322  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 47614238 - 47614185
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcc 96  Q
    |||| |||||||||||||||||||||||||  |||  |||||||||||||||||    
T  47614238 ggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgcactttagcc 47614185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 11671395 - 11671443
Alignment:
Q  51 aaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||    
T  11671395 aaaattgcaagtttttgaaagttaggcggaaaaagtgcactttagccta 11671443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 28262279 - 28262187
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagcctatatt 102  Q
    ||||||||| ||||||||| ||||    ||||  |||| |||||| ||||  ||||||||||||  ||| |||||||||||||||||||||||    
T  28262279 catagggggccaaaattgtggttttcatacatggggggccaaaatcgcaacgttttgaaagttaggggggaaaagtgcactttagcctatatt 28262187  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 24422885 - 24422798
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || || || ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  24422885 tagggggccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcactttagccta 24422798  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 11437215 - 11437302
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || || ||||||  |||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  11437215 tagggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagccta 11437302  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 39153136 - 39153214
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcacttta 93  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |||  ||||||||||||||    
T  39153136 gggtcaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 39153214  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 14999362 - 14999280
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctatat 101  Q
    ||||||||||||||| || || || ||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||    
T  14999362 tcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggaaaagtacactttagcctatat 14999280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 39699783 - 39699867
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| || || || ||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  39699783 tagggggccaaaattgtagtttctgtacttagggggtcaaaattgcaagttattgaaagttaggggggaaaagtgcactttagcc 39699867  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 52275045 - 52274967
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||||| || || || ||||||||||||||||||||||||||||||  |||  ||||||||||||||||||    
T  52275045 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcct 52274967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 45157229 - 45157310
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||| || ||||| |||| ||||||||||||||||||||| |||   ||| |||||||||||||||||    
T  45157229 gggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaagtgcactttagcct 45157310  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 45149989 - 45150073
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    ||||| ||||||||| |||| || || ||||||| |||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  45149989 ggggggcaaaattgttgtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttaaccta 45150073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 51685781 - 51685868
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||| || |||||  ||| |||||| |||| ||||||||||||  |  ||||||||||||||||||||||    
T  51685781 tagggggtcaaaattgtagtttttgtacatagagggccaaaatcgcaactttttgaaagttagagggggaaaagtgcactttagccta 51685868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 11436127 - 11436041
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcct 97  Q
    ||||||| |||||||||||||| |  || |||  || ||||||||||||||||||||||||||   |||||||||||||||||||||    
T  11436127 tagggggccaaaattgtagtttttatacttaaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcactttagcct 11436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 33088641 - 33088719
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcct 97  Q
    |||||||||||||| || || ||| |||||||||||||||||||||||| |||  |  |||||||||||||||||||||    
T  33088641 caaaattgtagtttttgtacttaaagggtcaaaattgcaagtttttgaatgttagagagggaaaagtgcactttagcct 33088719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 35067018 - 35067112
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctatattatt 105  Q
    ||||||| |||||||||||||| ||  |||| |||| |||||| |||| ||||||||| ||||   ||||||||||||||||||||||| |||||    
T  35067018 tagggggccaaaattgtagtttttgttcatagggggccaaaatcgcaactttttgaaacttaaggggggaaaagtgcactttagcctattttatt 35067112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 43060025 - 43060083
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||||||||| || || ||||||||||||||| ||| |||||||||||||    
T  43060025 ggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttgaaagtta 43060083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 51684451 - 51684366
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| |  ||||| |||| ||||||||||| ||||| ||||||||   ||||||||||||||||||||    
T  51684451 tagggggccaaaattgtagtttttatacatagggggccaaaattgcaactttttaaaagttaaggggggaaaagtgcactttagcc 51684366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 35594271 - 35594216
Alignment:
Q  44 aggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  35594271 aggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcct 35594216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 36613920 - 36614010
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctatat 101  Q
    |||||||||||||||||||||| || || || |||| ||||||| ||||||||| |||||||  |  |||||| |||||||||||| ||||    
T  36613920 tagggggtcaaaattgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggaggaaaaatgcactttagccaatat 36614010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 52827400 - 52827346
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  52827400 ggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcct 52827346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 12389997 - 12390086
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctata 100  Q
    ||||||| ||||||| || ||| || ||||| ||| ||||||| |||| ||||||||||||||   ||||||| ||||||||||||||||    
T  12389997 tagggggccaaaattataatttttgtacataggggatcaaaatcgcaactttttgaaagttaaggagggaaaaatgcactttagcctata 12390086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 39152010 - 39151929
Alignment:
Q  19 gtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    |||||||||||||||| || ||||| |||| ||||||| ||||||||||||| |||| |||  |||| ||||||||| ||||    
T  39152010 gtcaaaattgtagtttttgtacatagggggccaaaattacaagtttttgaaacttaagggggaaaaaatgcactttaaccta 39151929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 45148665 - 45148581
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| |  || || |||| ||||||||||||||||||||||||||   || |||||||||||||||||    
T  45148665 taggggggcaaaattgtagtttttt-acttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcactttagcc 45148581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 46066599 - 46066525
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||||||||||| || ||||||||||  ||||| |||| |||||||||||||   |||||||||||||| ||||    
T  46066599 aaaattgtagtttttgtacataaggggctaaaatcgcaactttttgaaagttaggaggaaaagtgcacttaagcc 46066525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 43058861 - 43058800
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaa 83  Q
    ||||||||||||| || || || |||||||||||||||||||||| |||||||  |||||||    
T  43058861 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttcaaagttagggggaaaa 43058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 43378729 - 43378810
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcacttta 93  Q
    |||| ||||||||||||| ||| || || || ||| ||||||||| |||||||||||||||||  | |||||||||||||||    
T  43378729 taggtggtcaaaattgtaatttttgtacttaggggatcaaaattgtaagtttttgaaagttaagagagaaaagtgcacttta 43378810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 24426100 - 24426152
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||| || || || |||| |||||||||||||||||||||||||    
T  24426100 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagtta 24426152  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 39222521 - 39222575
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatggg---aaaagtgcactttagcc 96  Q
    |||| |||||||||||||||||||||||||| |||   |||||||||||||||||    
T  39222521 ggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcactttagcc 39222575  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 41364881 - 41364829
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagcc 96  Q
    |||| |||||||||||||||||||||||||  || ||||||||||||||||||    
T  41364881 ggggccaaaattgcaagtttttgaaagttaggggagaaaagtgcactttagcc 41364829  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 7675475 - 7675562
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagcctat 99  Q
    ||||||||||||||| || ||| |  || || | || |||||||||||||||||||||||||| || | ||||| |||||||||||||    
T  7675475 tagggggtcaaaattataatttttttacttaggagggcaaaattgcaagtttttgaaagttaaaggtggaaagtacactttagcctat 7675562  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7983134 - 7983047
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagcctat 99  Q
    ||||||| ||||||||| ||||    ||||| |||| |||||||||||||| ||||||||||  || ||||||||||||||| |||||    
T  7983134 taggggggcaaaattgtggttttgatacatagggggccaaaattgcaagttgttgaaagttacgggagaaaagtgcactttaacctat 7983047  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 25652770 - 25652711
Alignment:
Q  42 taaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctata 100  Q
    |||||| |||||||||||||||||||||| ||| | || ||| |||||||||||||||||    
T  25652770 taagggatcaaaattgcaagtttttgaaaattagaaggaaaaggtgcactttagcctata 25652711  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 41366175 - 41366237
Alignment:
Q  42 taaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctatatt 102  Q
    |||||||  ||||||||| ||||||||||||||  | ||||||||||||||||||||| ||||    
T  41366175 taaggggctaaaattgcatgtttttgaaagttaggaggggaaaagtgcactttagcctttatt 41366237  T

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Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 16290170 - 16290089
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atggg--aaaagtgcactttagcctata 100  Q
    ||||||||||||| |  |||||||||  ||||||||||| |||||||| |||| |||||  |||| ||||||||||||||||    
T  16290170 aaaattgtagtttttatacataagggaccaaaattgcaactttttgaacgttagatggggaaaaaatgcactttagcctata 16290089  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 30249509 - 30249567
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||||||||| || ||||||  | |||||||| ||| |||||||||||||    
T  30249509 ggggtcaaaattgtagtttttgtacataaaagatcaaaattacaactttttgaaagtta 30249567  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 7674605 - 7674525
Alignment:
Q  19 gtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctat 99  Q
    |||||||||||||||| || || || |||  ||||||||||||||||| |||||||   |||||||| ||||||||||||||    
T  7674605 gtcaaaattgtagtttttgtactta-gggcccaaaattgcaagtttttaaaagttaggggggaaaagggcactttagcctat 7674525  T

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Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 50680384 - 50680323
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagcctatattatt 105  Q
    |||| |||||||||||||||||| |||||||  ||||||| ||||||||| ||||| |||||    
T  50680384 ggggccaaaattgcaagtttttggaagttaagggggaaaaatgcactttaacctattttatt 50680323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 50681657 - 50681705
Alignment:
Q  50 caaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  50681657 caaaattgcaagtttttgaaaattaagaggggaaaagtgcactttagcc 50681705  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 23980490 - 23980569
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    ||||||| |||||| || || || || | ||||||||||||||||| ||||||  |  ||||||||||||||||||||||    
T  23980490 caaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcactttagccta 23980569  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 26421641 - 26421724
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||| || || || | |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  26421641 ggggtcaaaattgtagtttttgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcactttagccta 26421724  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 17383075 - 17382985
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagcctatattat 104  Q
    ||||| |||||||||||||| || || ||||||  |||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  17383075 gggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaggggagaaaagtgcactttagcctatattat 17382985  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 17388229 - 17388315
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctata 100  Q
    ||||| ||||||||||||||||| || ||||||  |||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  17388229 gggggccaaaattgtagtttatgtacttaagggaccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttagcctata 17388315  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 49308042 - 49308130
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcctat 99  Q
    ||||||||| |||||||||||||| || || || |||| |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  49308042 cataggggg-caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttagcctat 49308130  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 1835118 - 1835205
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||||||    || || ||||||||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  1835118 tagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagtgcactttagccta 1835205  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 12129705 - 12129626
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcacttta 93  Q
    ||||||||||||||||||| || || || |||| |||||||||||||||||||||||||  | |||||||||||||||||    
T  12129705 ggggtcaaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcacttta 12129626  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 31601004 - 31601086
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcc 96  Q
    ||||||||||||||||||| || || || |||||||||||||||||||||| |||||||  |||  |||||||||||||||||    
T  31601004 ggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcactttagcc 31601086  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 1963281 - 1963194
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || ||||| | || ||||||||||| ||||||||||||||   ||||||||||||||||||||||    
T  1963281 tagggggctaaaattgtagtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcactttagccta 1963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 5526174 - 5526228
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  5526174 ggggccaaaattgcaagtttttgaaagttagaggggaaaagtgcactttagccta 5526228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 8757751 - 8757673
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagccta 98  Q
    |||||||||||||| || || || ||||  ||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  8757751 caaaattgtagtttctgtacttagggggctaaaattgtaagtttttgaaagttaaggggaaaaagtgcactttagccta 8757673  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 10470598 - 10470545
Alignment:
Q  46 gggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  10470598 gggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcct 10470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 8155822 - 8155741
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtc-aaaattgcaagtttttgaaagttaatgggaaaagtgcacttta 93  Q
    ||||||| |||||||||||||| || || || |||  | ||||||||||||||||||||||||  |||||||||||||||||    
T  8155822 tagggggccaaaattgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttagggggaaaagtgcacttta 8155741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 1290214 - 1290301
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || || ||  ||| |||||||||||| |||||||||||||   ||||||||||||||||||||||    
T  1290214 tagggggctaaaattgtagtttttgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcactttagccta 1290301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 1834202 - 1834119
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcc 96  Q
    ||||| |||||||||||||| |  ||||| ||||||||||||| |||||||| ||||||  |  ||||||||||||||||||||    
T  1834202 gggggccaaaattgtagtttttatacatagggggtcaaaattgtaagttttttaaagttagagggggaaaagtgcactttagcc 1834119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 8758856 - 8758935
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcacttta 93  Q
    |||| |||||||||||||| || || || |||| ||||||||||||||||||||||||||   |||||||||||| ||||    
T  8758856 ggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcatttta 8758935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 25685838 - 25685925
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    ||||||||| ||||||| ||||  | || || |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  25685838 tagggggtctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccta 25685925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 55603549 - 55603633
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagccta 98  Q
    ||||| |||||| ||||||| || ||| | ||| | ||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  55603549 gggggccaaaatagtagtttttgtacacaggggattaaaattgcaagtttttgaaagttaaggggaaaaagtgcactttaaccta 55603633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 25684986 - 25684925
Alignment:
Q  46 gggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctatattatta 106  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||| |||||||||    
T  25684986 gggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc-atattatta 25684925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 31599866 - 31599788
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||||| || || || |||||||||||||||||||||| |||||||  |||  |||||||||||| |||||    
T  31599866 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcct 31599788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 10471436 - 10471489
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    |||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  10471436 ggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10471489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 19750591 - 19750673
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttag 94  Q
    |||||||  ||||||||||||| || || || |||| ||||||||||||||||| |||||||   ||||||||||||||||||    
T  19750591 taggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaggggggaaaagtgcactttag 19750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 19789215 - 19789133
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttag 94  Q
    |||||||  ||||||||||||| || || || |||| ||||||||||||||||| |||||||   ||||||||||||||||||    
T  19789215 taggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaggggggaaaagtgcactttag 19789133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 21178081 - 21177995
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||| ||  |||| ||| |||||||||||| ||| |||||||||   ||| ||||| ||||||||||||    
T  21178081 tagggggtcaaaattgtagtttttgttcataggggatcaaaattgcaactttatgaaagttagggggggaaagtacactttagccta 21177995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 52491623 - 52491712
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctata 100  Q
    ||||||| |||||||||||||| || |  ||  ||  |||||||||||||||||||||||||| |  |||||||| ||||||||||||||    
T  52491623 tagggggccaaaattgtagtttctgtatttagaggaccaaaattgcaagtttttgaaagttaagggtggaaaagtacactttagcctata 52491712  T

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Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 13386580 - 13386635
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatggg---aaaagtgcactttagcct 97  Q
    ||||||||||||||||||||||||||||||  |||   ||||||||||||||||||    
T  13386580 ggggtcaaaattgcaagtttttgaaagttagggggggaaaaagtgcactttagcct 13386635  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 48780301 - 48780246
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||| |||||||    ||||||||||||||||||||||    
T  48780301 ggggtcaaaattgcaagtttttaaaagttagggggggaaaagtgcactttagccta 48780246  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 35934390 - 35934347
Alignment:
Q  50 caaaattgcaagtttttgaaagttaatgggaaaagtgcacttta 93  Q
    ||||||| |||||||||||||||||  |||||||||||||||||    
T  35934390 caaaattacaagtttttgaaagttagggggaaaagtgcacttta 35934347  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 35935549 - 35935631
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcacttta 93  Q
    ||||||| ||||||||||||||||| || || ||||  |||||||||| ||||| ||||||||   ||| |||||||||||||    
T  35935549 tagggggccaaaattgtagtttatgtacttagggggctaaaattgcaaatttttaaaagttaagggggggaaagtgcacttta 35935631  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 1964465 - 1964542
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcc 96  Q
    |||||||||||||| ||  |||| |||| |||||||| || ||||| |||||||| |  |||||||||||||||||||    
T  1964465 caaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcactttagcc 1964542  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 21539087 - 21539149
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa 75  Q
    |||||||||||||||||||||| | ||| || | || ||||||||||||||||| ||| ||||    
T  21539087 tagggggtcaaaattgtagtttttacacttaggaggccaaaattgcaagtttttaaaaattaa 21539149  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 49306851 - 49306773
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg-gaaaagtgcactttagccta 98  Q
    |||||||||||||| || || |||  || ||||||||||||||||||||||||   ||  |||||||||||||||||||    
T  49306851 caaaattgtagtttttgtacttaaatggccaaaattgcaagtttttgaaagttgggggaaaaaagtgcactttagccta 49306773  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 5525412 - 5525383
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||||||||||||||||||||    
T  5525412 ggggtcaaaattgcaagtttttgaaagtta 5525383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 37728585 - 37728642
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    |||||||||||||||||| || ||||| | || ||||||||||| ||||| |||||||    
T  37728585 gggtcaaaattgtagtttttgtacataggaggccaaaattgcaactttttaaaagtta 37728642  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 50909690 - 50909774
Alignment:
Q  14 agggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||||| |  ||||| || |||||||| |||| ||||| ||| |||   ||| |||||||||||||||||    
T  50909690 agggggtcaaaattgtagtttttatacatagggagtcaaaatcgcaactttttaaaacttagggtggaaaaagtgcactttagcc 50909774  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 10447092 - 10447006
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaat---gggaaaagtgcactttagcc 96  Q
    |||||||  |||||||| |||| || ||||| ||||  |||||||||| ||||||||| ||||    ||||||||||||||||||||    
T  10447092 taggggggtaaaattgtggtttttgtacatagggggctaaaattgcaactttttgaaacttaagagggggaaaagtgcactttagcc 10447006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18300743 - 18300829
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcctatatt 102  Q
    ||||||||||||||||||| || || || |||||||||||||||||||| |||||||||  |||||||||||| |||||| ||||||    
T  18300743 ggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttatgaaagttagggggaaaagtgcaatttagcttatatt 18300829  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36449861 - 36449772
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctatatt 102  Q
    ||||| |||||||||||||| || || || |||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  36449861 ggggggcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctatatt 36449772  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 18797332 - 18797243
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg---ggaaaagtgcactttagcctat 99  Q
    ||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  18797332 tagggggtcaaaattgtagttttaatacttaaggggtcaaaattgcaagtttttgaaagttagggggtggaaaagtgcactttagcctat 18797243  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 18904444 - 18904365
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||||||||||| || || ||||||| |||||||||| |||||||||||||||   ||||||||||||||||||||||    
T  18904444 caaaattgtagtttttgtacttaaggggccaaaattgcacgtttttgaaagttaaggggggaaaagtgcactttagccta 18904365  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 41879228 - 41879315
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    |||||||| |||||||||||||||| || || |||| ||||||||||||||||||||| |||| |||  ||||||| |||||||||||    
T  41879228 tagggggttaaaattgtagtttatgtacttagggggccaaaattgcaagtttttgaaaattaagggggaaaaagtgtactttagccta 41879315  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 32739706 - 32739647
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  32739706 gggggccaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagtta 32739647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 38840509 - 38840597
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctat 99  Q
    |||||||  ||||||||||||| || || || ||||  |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  38840509 tagggggctaaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctat 38840597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 7899898 - 7899985
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || || || |||  ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  7899898 tagggggctaaaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagccta 7899985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 22587973 - 22588055
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcct 97  Q
    |||| |||||||||||||| || ||||| |||| |||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  22587973 ggggccaaaattgtagtttttgtacata-ggggccaaaattgcaagtttttgaaagttatgaggggaaaaatgcactttagcct 22588055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 18906012 - 18906090
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    ||||||||||||| || || || ||||  |||||||||||||||||||||||  || ||||||||||||||||||||||    
T  18906012 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcactttagccta 18906090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 802611 - 802692
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||| || ||| | |||| ||||||||||||||||||||| |||   ||||||||| |||||||||||    
T  802611 gggtcaaaattgtagtttttgtacacagggggccaaaattgcaagtttttgaaacttaggggggaaaagtacactttagcct 802692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 21837122 - 21837070
Alignment:
Q  44 aggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||| |||||||||||||||||||||||||  || |||||||||||||||||    
T  21837122 aggggccaaaattgcaagtttttgaaagttagaggaaaaagtgcactttagcc 21837070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 21837303 - 21837355
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcct 97  Q
    |||| |||||||||||||||||||||||||  || ||||||||||||||||||    
T  21837303 ggggccaaaattgcaagtttttgaaagttaggggaaaaagtgcactttagcct 21837355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 36450947 - 36451023
Alignment:
Q  23 aaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagccta 98  Q
    |||||||||||| || || || |||  ||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  36450947 aaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttaaccta 36451023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 13030344 - 13030293
Alignment:
Q  44 aggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagc 95  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||||||||||    
T  13030344 aggggccaaaattacaagtttttgaaagttagggggaaaagtgcactttagc 13030293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 810801 - 810854
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaa 70  Q
    |||||||||||||||||| || ||| | |||| |||||||||||||||||||||    
T  810801 gggtcaaaattgtagtttttgtacacagggggccaaaattgcaagtttttgaaa 810854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7898776 - 7898688
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagcctat 99  Q
    ||||||| |||||||||||||| |  || || | ||  ||||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  7898776 tagggggccaaaattgtagtttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcactttaacctat 7898688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 16446232 - 16446152
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagccta 98  Q
    ||||||||||||||| || |  || | ||| ||||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  16446232 tcaaaattgtagtttttgtatttatgaggttaaaattgcaagtttttgaaagttaagggtagaaaaatgcactttagccta 16446152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 8535672 - 8535752
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcacttta 93  Q
    |||||||||||||||||||||| |  || ||| || |||||||| ||||||||| |||||||   ||||||||| ||||||    
T  8535672 tagggggtcaaaattgtagtttctctacttaaaggatcaaaattacaagtttttaaaagttaggaggaaaagtgtacttta 8535752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 11258836 - 11258888
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||| || || || |||| |||||||||||||||||||||||||    
T  11258836 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagtta 11258888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 18299460 - 18299373
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcc 96  Q
    ||||||||| |||||||||||||| |  || || | || |||||||| ||||||||||||||||  |  |||||||||||||||||||    
T  18299460 catagggggccaaaattgtagtttttatacttaggtggccaaaattgaaagtttttgaaagttacgggtggaaaagtgcactttagcc 18299373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 38839327 - 38839240
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| || |  || ||||  |||||||||||||||||||| |||| |||  |||| ||||||||||||||    
T  38839327 tagggggccaaaattgtagtttttgtagttagggggctaaaattgcaagtttttgaaaattaagggggaaaaaatgcactttagccta 38839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 11938841 - 11938891
Alignment:
Q  50 caaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  11938841 caaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagccta 11938891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 22848268 - 22848190
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||||| || |  || |||  |||||||||||||||||||||||||  |||  ||||||||||||||||||    
T  22848268 caaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcct 22848190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 23869560 - 23869637
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    ||||||||||||| || |  || |||| ||||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  23869560 aaaattgtagtttttgtatttagggggccaaaattgcaagttttt-aaagttaagggtggaaaagtgcactttagccta 23869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 1034517 - 1034570
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    |||| |||||||||| |||||||||||||||   ||||||||||||||||||||    
T  1034517 ggggccaaaattgcatgtttttgaaagttaaggggggaaaagtgcactttagcc 1034570  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 41878176 - 41878092
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgca---agtttttgaaagttaa-tgggaaaagtgcactttagcc 96  Q
    |||| |||||||||||||| || || || |||| ||||||||||   ||||||||||||||||  ||| ||||||||||||||||    
T  41878176 ggggccaaaattgtagtttctgtacttagggggccaaaattgcaaatagtttttgaaagttaaggggggaaagtgcactttagcc 41878092  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 18869002 - 18868922
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    ||||||||||||||| || |  || | || |||||||||||||||||||||||||  |  |||||||| ||||||||||||    
T  18869002 tcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagccta 18868922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 26545541 - 26545621
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagt--taatgggaaaagtgcactttagc 95  Q
    ||||||||||| || ||| || |  ||||||||||||||||||| |||||||||||  | | || ||||||||||||||||    
T  26545541 gggtcaaaattataatttttgtatttaaggggtcaaaattgcaaatttttgaaagtcatgaaggaaaaagtgcactttagc 26545621  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 13568050 - 13567975
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcacttta 93  Q
    ||||||||||||||| || |  || |||| ||||||||||||||||||||| ||  || ||||||||| |||||||    
T  13568050 tcaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacacttta 13567975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 24476863 - 24476943
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||| || || || |||  ||||||| ||||||||| ||||||   || ||||||||||| |||||    
T  24476863 ggggtcaaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagttgggggaaaaagtgcactctagcc 24476943  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 16704520 - 16704600
Alignment:
Q  20 tcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    ||||||||||||||| || || || ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  16704520 tcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggaggaaaagtgcactttagccta 16704600  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 26575070 - 26575150
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcacttta 93  Q
    ||||||| |||||||||||||| || || |||||||| ||||||||||||||||||||||||  | | |||||||||||||    
T  26575070 tagggggccaaaattgtagtttttgtacttaaggggttaaaattgcaagtttttgaaagttagagaggaaagtgcacttta 26575150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 8660250 - 8660305
Alignment:
Q  44 aggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  8660250 aggggtcaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcct 8660305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 14823591 - 14823685
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg---aaaagtgcactttagcctatattat 104  Q
    ||||||| |||||||||||||| || || |||||||  |||||||||||||||| ||| |||| |||   |||||||||||||||||||| ||||    
T  14823591 tagggggccaaaattgtagtttctgtacttaaggggctaaaattgcaagttttttaaaattaagggggaaaaaagtgcactttagcctattttat 14823685  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 6842308 - 6842386
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    ||||||||||||| |||||||| |||| ||||||||||| ||||||||| ||  |  ||||||||||||||||||||||    
T  6842308 aaaattgtagtttttgcacatagggggccaaaattgcaactttttgaaacttagagggggaaaagtgcactttagccta 6842386  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 8822841 - 8822894
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  8822841 ggggtcaaaattgcaagtttttgaaagttaaagagggaaaagtgcactttagcc 8822894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 7316342 - 7316398
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctat 99  Q
    |||| ||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  7316342 ggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctat 7316398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 10784676 - 10784589
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa---tgggaaaagtgcactttagcctat 99  Q
    ||||| |||||||||||||| |  || || ||||| |||||||||||||||| ||||||||    |||||||||||||||||||||||    
T  10784676 gggggccaaaattgtagtttttatacttagggggttaaaattgcaagtttttaaaagttaagggagggaaaagtgcactttagcctat 10784589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 27437913 - 27437825
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagcctat 99  Q
    |||||||||||||||||||||| |    ||| |||| ||||||||||| ||||| |||||||| ||  |||||||||||||||||||||    
T  27437913 tagggggtcaaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcctat 27437825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 14822445 - 14822358
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagccta 98  Q
    ||||||| |||||||||||||| |  || || |||| ||||||||||||||||||||| |||| ||  |||||||||||| |||||||    
T  14822445 tagggggccaaaattgtagtttctatacttatggggccaaaattgcaagtttttgaaaattaaggggtgaaaagtgcactctagccta 14822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 1829619 - 1829701
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcacttta 93  Q
    ||||||| |||||||||||||| |  || || |||||||||||||||||||||| |||||||  |||  ||||||||||||||    
T  1829619 tagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttagggggaaaaaagtgcacttta 1829701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 3721665 - 3721611
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  3721665 ggggtcaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcct 3721611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 3722556 - 3722610
Alignment:
Q  46 gggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  3722556 gggtcaaaattgcaagtttttgaaagttagggagggaaaagtgcactttagccta 3722610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 8821926 - 8821864
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctatattatt 105  Q
    |||| ||||||||||||||||||||||||  |  |||||||||||||||||||||| ||||||    
T  8821926 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctaaattatt 8821864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 16703617 - 16703570
Alignment:
Q  49 tcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  16703617 tcaaaattgcaagtttttgaaagatagggggaaaagtgcactttagcc 16703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 6840273 - 6840192
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    ||||||||||| |||||| || |  ||||||| |||||| |||| ||||||||| |||| ||| ||||||||||| ||||||    
T  6840273 gggtcaaaattatagtttttgtatttaaggggccaaaatcgcaactttttgaaacttaagggggaaagtgcacttcagccta 6840192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 8659318 - 8659263
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  8659318 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccta 8659263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 7314934 - 7314880
Alignment:
Q  44 aggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcc 96  Q
    ||||| ||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  7314934 aggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 7314880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 26717129 - 26717183
Alignment:
Q  42 taaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttag 94  Q
    ||||||||||||||||||||||| ||||| ||||   ||||||||||||||||||    
T  26717129 taaggggtcaaaattgcaagtttctgaaacttaaggggggaaaagtgcactttag 26717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 34834631 - 34834684
Alignment:
Q  49 tcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctata 100  Q
    ||||||||||||||||||||||||||    ||||||||||||||||| ||||||    
T  34834631 tcaaaattgcaagtttttgaaagttagggagggaaaagtgcactttaacctata 34834684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 16415576 - 16415636
Alignment:
Q  40 cataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagccta 98  Q
    |||||||||||||||| |||| ||||| ||| |||| ||  ||||||||||||||||||||    
T  16415576 cataaggggtcaaaatcgcaactttttaaaatttaaggggtgaaaagtgcactttagccta 16415636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 12350882 - 12350823
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt 73  Q
    |||||||| ||||||||||||| |  ||||| |||||||||||||||||||| | ||||||    
T  12350882 tagggggttaaaattgtagtttttatacata-ggggtcaaaattgcaagtttattaaagtt 12350823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 27318367 - 27318307
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatgggaaaa-gtgcactttagcctatattat 104  Q
    |||| |||||||||||| ||||||||| ||  ||||||| |||||||||||||||| ||||    
T  27318367 ggggccaaaattgcaagattttgaaagatagggggaaaaggtgcactttagcctattttat 27318307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 27322116 - 27322172
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagcctata 100  Q
    |||| |||||||||||| ||||||||| ||  ||| |||||||||||||||||||||    
T  27322116 ggggccaaaattgcaagattttgaaagataggggggaaaagtgcactttagcctata 27322172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 30495717 - 30495797
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    |||| |||||||||  ||| || ||||| ||| | ||||| |||| |||||||||||||  || |||||||||||||||||    
T  30495717 ggggccaaaattgttatttttgtacataggggattaaaatcgcaactttttgaaagttaggggaaaaagtgcactttagcc 30495797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 60177 - 60090
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcc 96  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||||||||||| |||||||  |  |||||||||||||||||||    
T  60177 catagggggtcaaaattgtagtttttatacatagggggtcaaaattgcaagtttttaaaagttagaggaggaaaagtgcactttagcc 60090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 61473 - 61559
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagc 95  Q
    ||||||||| ||||||| |||||| || || || ||||  |||||||||||||||||||| |||| |  ||||||||||||||||||    
T  61473 catagggggccaaaattatagtttttgtacttagggggctaaaattgcaagtttttgaaaattaagggaggaaaagtgcactttagc 61559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 25523154 - 25523067
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||| || || || ||||  |||||||||||||||||||||||||   ||||||||||||||||||||||    
T  25523154 tagggggtcaaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagccta 25523067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 28538761 - 28538674
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| || || |||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  28538761 tagggggctaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcactttagccta 28538674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 19752998 - 19752911
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcct 97  Q
    ||||||||| |||||||||||||| || || || |||| |||||||||||||||||||||||||   |||||||||||||||||||||    
T  19752998 catagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttagcct 19752911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 24332994 - 24332916
Alignment:
Q  17 gggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcacttta 93  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |||  ||||||||||||||    
T  24332994 gggtcaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 24332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 22940641 - 22940723
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    ||||||||||||||| ||| || || || |||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  22940641 ggggtcaaaattgtaatttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 22940723  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 25056397 - 25056482
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    ||||||||||||||||||||||    || || ||||||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  25056397 tagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcactttagcc 25056482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 5777952 - 5777899
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagccta 98  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  5777952 ggggtcaaaattgcaagtttttgaaagttaggggggaaagtgcactttagccta 5777899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 40255688 - 40255776
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcctat 99  Q
    ||||||| |||||||||||||| || |  || |||||||||||||||||||||| ||| |||  | |||||||||||||||||||||||    
T  40255688 tagggggccaaaattgtagtttctgtatttagggggtcaaaattgcaagtttttaaaaattaagaggggaaaagtgcactttagcctat 40255776  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 16650871 - 16650958
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    |||||||  ||||||||||||| |  || || |||||||||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  16650871 tagggggctaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcactttagccta 16650958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 33158180 - 33158097
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    ||||||||||||||||||| || || || || |||||||||||||||||||||||||||  |||  |||| |||||||||||||    
T  33158180 ggggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaaaaatgcactttagcct 33158097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33160305 - 33160390
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcctat 99  Q
    ||||||||||||||||||| |  || || ||||  |||||||||||||||||||| |||| |||  ||||||||||||||||||||    
T  33160305 ggggtcaaaattgtagtttctatacttagggggctaaaattgcaagtttttgaaaattaaggggggaaaagtgcactttagcctat 33160390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 18154570 - 18154491
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcctat 99  Q
    |||||||||||||| || || || ||||||||||||| ||||||||||||||||| |||  |||||| |||||||||||||    
T  18154570 caaaattgtagtttttgtactta-ggggtcaaaattgtaagtttttgaaagttaaggggaaaaaagttcactttagcctat 18154491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 19754144 - 19754235
Alignment:
Q  11 catagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg---aaaagtgcactttagcctat 99  Q
    ||||||||| |||||||||||||| || |  || |||| |||||||||||||||||||||||||  |||   |||| |||||||||||||||    
T  19754144 catagggggccaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttaggggggaaaaaaatgcactttagcctat 19754235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 20214277 - 20214196
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagcc 96  Q
    |||| |||||||||||||| || |||||  | |  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  20214277 ggggccaaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcc 20214196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 21835125 - 21835040
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||| || ||||| |||||||||||  ||| ||||| ||| ||| | ||| |||||||||||||||||    
T  21835125 tagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttagagggggaaagtgcactttagcct 21835040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 5730490 - 5730432
Alignment:
Q  50 caaaattgcaagtttttgaaagttaa---tgggaaaagtgcactttagcctatattatt 105  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||    
T  5730490 caaaattgcaagtttttgaaagttaagggggggaaaagtgcactttagcctagattatt 5730432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 18486918 - 18487005
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    ||||||| ||||||||| |||| |  || || |||| ||||||||||||||||||||||||||   ||| ||||||||||||||||||    
T  18486918 tagggggccaaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaagggggggaaagtgcactttagccta 18487005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 36486512 - 36486590
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||||| || || || |||||||||||||||||||||| |||||||  |||  |||||||||||| |||||    
T  36486512 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcct 36486590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25055497 - 25055407
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctatat 101  Q
    ||||||| |||||||||||||| |  ||||| ||| |||||||||||||   || ||||||  |  |||||||||||||||||||||||||    
T  25055497 tagggggccaaaattgtagtttttatacataggggatcaaaattgcaagaagtttaaagttagagggggaaaagtgcactttagcctatat 25055407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 5778890 - 5778939
Alignment:
Q  51 aaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  5778890 aaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccta 5778939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 20216781 - 20216866
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    ||||| |||||||||||||| || | ||| || |  |||||||||||||||||||| ||||   ||||||||||||||||| ||||    
T  20216781 gggggccaaaattgtagtttttgtatatagggagctaaaattgcaagtttttgaaaattaaggggggaaaagtgcactttaaccta 20216866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 34893739 - 34893689
Alignment:
Q  24 aattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||| || ||||| || | |||||||||||||||||||||||||    
T  34893739 aattgtagtttttgtacatagggagccaaaattgcaagtttttgaaagtta 34893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 28539844 - 28539897
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    |||||||||||||| || || ||  ||||||||||||||||||||| |||||||    
T  28539844 caaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagtta 28539897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 36485385 - 36485324
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||| ||||||| |||||| || || |||| ||||||||||| |||||||| |||||||    
T  36485385 tagggggccaaaattatagtttttgtacttaagaggtcaaaattgtaagttttttaaagtta 36485324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 38834162 - 38834102
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaa 83  Q
    ||||||||||||| || |||||| |||||||||| |||| ||||| |||||||| |||||||    
T  38834162 aaaattgtagtttttgtacataa-gggtcaaaatcgcaactttttaaaagttaaggggaaaa 38834102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 1796137 - 1796054
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcc 96  Q
    |||| ||||||||||||||| || || || | || |||| ||||||||||||||||||||  |  |||||| ||||||||||||    
T  1796137 ggggatcaaaattgtagtttttgtacttaggtggccaaagttgcaagtttttgaaagttaggggtggaaaaatgcactttagcc 1796054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 18485191 - 18485132
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcctatatt 102  Q
    |||| ||||||||||||||||| |||||||  |||  |||||||||||||||||| ||||    
T  18485191 ggggccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcctttatt 18485132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 5457 - 5541
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    |||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||    ||||||||||||||||||||||    
T  5457 gggggcaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggggaaaagtgcactttagccta 5541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 5514066 - 5513977
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg-aaaagtgcactttagcctatat 101  Q
    ||||||| |||||||||||||| || || || |||| |||||||| ||||||||||||||||  ||| ||||||||||||||||||||||    
T  5514066 taggggggcaaaattgtagtttttgtacttagggggccaaaattggaagtttttgaaagttagggggtaaaagtgcactttagcctatat 5513977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 12352006 - 12351920
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcct 97  Q
    |||||||||||||||||||||| || || || |||||||||||||||| ||||||||||||||   ||| ||| |||||||||||||    
T  12352006 tagggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaaatttttgaaagttaagggggggaaaatgcactttagcct 12351920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 22221380 - 22221466
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||||||    || || ||||||||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  22221380 tagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcct 22221466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 22227722 - 22227808
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    ||||||||||||||||||||||    || || ||||||||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  22227722 tagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcct 22227808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 12353377 - 12353466
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcactttagcctatatt 102  Q
    ||||||| ||||||| |||||| || || || |||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||    
T  12353377 tagggggccaaaattatagttt-tgtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcctttatt 12353466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 32207349 - 32207425
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcct 97  Q
    |||||||||||||| || || || || |||||||||||||||||||||| ||||  ||| |||||||||||||||||    
T  32207349 caaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttaggggggaaagtgcactttagcct 32207425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 10007811 - 10007868
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcctata 100  Q
    |||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10007811 ggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctata 10007868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 22220473 - 22220388
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcc 96  Q
    ||||||| |||||||||||||| |  ||||| |||||||||||||||||| ||| ||||||  |  ||||||||||||||||||||    
T  22220473 tagggggccaaaattgtagtttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcactttagcc 22220388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 8388547 - 8388463
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcct 97  Q
    ||||||| ||||||| |||||| || ||||| ||||  |||||||||| ||||| |||||||  ||| |||||||||||||||||    
T  8388547 tagggggccaaaattatagtttttgtacatagggggctaaaattgcaactttttaaaagttaggggggaaagtgcactttagcct 8388463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 8389714 - 8389792
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagccta 98  Q
    ||||||||||||| || |||||||||  ||||||||||| ||||||||| |||  | ||||||||||||||||| ||||    
T  8389714 aaaattgtagtttttgtacataagggaccaaaattgcaactttttgaaacttaagaggggaaaagtgcactttaaccta 8389792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 29968364 - 29968434
Alignment:
Q  24 aattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa-tgggaaaagtgcacttta 93  Q
    ||||||||||| || || || |||| ||||||||||||||||| ||||||||  |||||||||||||||||    
T  29968364 aattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaagtgcacttta 29968434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 1823627 - 1823551
Alignment:
Q  23 aaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||| || || ||  ||||||||||||||||||||| |||||||| |||  |||||| |||||||||||    
T  1823627 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcct 1823551  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 1824094 - 1824155
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||| |||||||||||||| || || || |||  |||||||||||||||||||||||||    
T  1824094 tagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagtta 1824155  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 1858072 - 1857996
Alignment:
Q  23 aaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagcct 97  Q
    |||||||||||| || || ||  ||||||||||||||||||||| |||||||| |||  |||||| |||||||||||    
T  1858072 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcct 1857996  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 1858539 - 1858600
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||| |||||||||||||| || || || |||  |||||||||||||||||||||||||    
T  1858539 tagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagtta 1858600  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 11282093 - 11282006
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    |||||||||||||||||  ||| || | ||| |||| ||||||||||| ||||| |||||||| |||  |||||||||||||| ||||    
T  11282093 tagggggtcaaaattgtcatttttgtatatagggggccaaaattgcaactttttaaaagttaagggggaaaaagtgcactttaaccta 11282006  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 43661839 - 43661925
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcct 97  Q
    ||||||| ||||||| |||||| || |||||  || | |||||||||| |||||||||||||| |  |||||||||||||| |||||    
T  43661839 tagggggccaaaattttagtttttgtacatagaggattaaaattgcaactttttgaaagttaagggtggaaaagtgcacttcagcct 43661925  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 10006397 - 10006344
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcc 96  Q
    |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||    
T  10006397 ggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 10006344  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 18970992 - 18970934
Alignment:
Q  16 ggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||||||||||||||| || || || |||| |||||||| ||| ||||||||||||    
T  18970992 ggggtcaaaattgtagtttttgtacttagggggccaaaattgaaagattttgaaagtta 18970934  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 24483196 - 24483143
Alignment:
Q  45 ggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttagcc 96  Q
    |||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  24483196 ggggccaaaattgcaagtttttgaaaattaggaggggaaaagtgcactttagcc 24483143  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 30568971 - 30568885
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    |||||| |||||||| |||||| || || |||| | ||||||||| || ||||||||| ||| | ||| ||||||||||||||||||    
T  30568971 taggggatcaaaattatagtttttgtacctaagagatcaaaattgtaactttttgaaacttagagggggaaagtgcactttagccta 30568885  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 11287861 - 11287800
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta 74  Q
    ||||||| |||||||||||||| || || ||  ||| ||||||||||||||||| |||||||    
T  11287861 tagggggccaaaattgtagtttctgtacttagtgggccaaaattgcaagttttttaaagtta 11287800  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 24122958 - 24122881
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    |||||| |||||| || || || |||||||||||||||| ||||| |||||||   ||||||| ||||||||||||||    
T  24122958 aaaattatagtttttgtacttagggggtcaaaattgcaaattttttaaagttaggggggaaaaatgcactttagccta 24122881  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 29043474 - 29043391
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagcctatatta 103  Q
    ||||||||||||| || ||||| ||||||||||| || | |||||||| ||||| |  ||||||||| ||||||| ||| ||||    
T  29043474 aaaattgtagtttttgtacatagggggtcaaaatcgcgactttttgaaggttaagggaggaaaagtgaactttaggctaaatta 29043391  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 43661350 - 43661267
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttag 94  Q
    ||||||| ||||||| |||||| || |||||||||  |||||||| || ||||| ||| |||| ||  ||||||||||||||||    
T  43661350 tagggggccaaaattatagtttttgtacataagggaccaaaattgtaacttttttaaaattaagggtagaaaagtgcactttag 43661267  T

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Target: scaffold0302 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 17553 - 17468
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatggg--aaaagtgcactttagccta 98  Q
    ||||| |||||||||||||| || || || |||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||    
T  17553 gggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcactttagccta 17468  T

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Target: scaffold1303 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 1524 - 1436
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctat 99  Q
    ||||||||||||||| |||||| |  ||||| |||||||||||||||||||||| ||||||  |  ||||||||| |||||||||||||    
T  1524 tagggggtcaaaattatagtttttatacatagggggtcaaaattgcaagttttttaaagttagagggggaaaagtacactttagcctat 1436  T

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Target: scaffold0093 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2481 - 2564
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaag-tttttgaaagttaatgggaaaagtgcactttagc 95  Q
    ||||||| |||||| || |||| || || || ||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  2481 tagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaaagttagggggaaaagtgcactttagc 2564  T

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Target: scaffold0093; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 7104 - 7187
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaag-tttttgaaagttaatgggaaaagtgcactttagc 95  Q
    ||||||| |||||| || |||| || || || ||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  7104 tagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaaagttagggggaaaagtgcactttagc 7187  T

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Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 23127 - 23081
Alignment:
Q  50 caaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcc 96  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  23127 caaaattgcaagtttttgaaagttagggggaaaagtgcactttagcc 23081  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 49449 - 49537
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgg--gaaaagtgcactttagcctat 99  Q
    |||||||||||||||||||||| |    ||| |||| ||||||||||| ||||| |||||||| ||  |||||||||||||||||||||    
T  49449 tagggggtcaaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcctat 49537  T

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Target: scaffold0632 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 3332 - 3410
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta-atgggaaaagtgcactttagccta 98  Q
    ||||||| |||||| || || || ||||||||||||| |||||||||||||| |   ||||||||||||||||||||||    
T  3332 caaaattatagtttttgtacctatggggtcaaaattgtaagtttttgaaagtaaggggggaaaagtgcactttagccta 3410  T

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Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 37232 - 37143
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgc-aagtttttgaaagttaatgggaaaagtgcactttagcctatat 101  Q
    ||||||| ||||||||| |||| || || || |||||||||||||| || ||||| |||| ||  |||||||||||||||||||| ||||    
T  37232 tagggggccaaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagatagggggaaaagtgcactttagccaatat 37143  T

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Target: scaffold0586 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 6428 - 6341
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatg--ggaaaagtgcactttagccta 98  Q
    |||||||||||||||||||||| || ||||| ||||  ||||| | || ||||||||| |||| |  |||||||||||||||| ||||    
T  6428 tagggggtcaaaattgtagtttttgtacatagggggctaaaatcgtaactttttgaaacttaagggcggaaaagtgcactttaaccta 6341  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 13267 - 13187
Alignment:
Q  22 aaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaatgggaaaagtgcactttagcctatatt 102  Q
    |||||||||||||  | ||||| | |||||||||  ||| ||||| |||||||  ||||||||||||||||||||| ||||    
T  13267 aaaattgtagttttcgtacataggaggtcaaaatcacaactttttcaaagttagggggaaaagtgcactttagcctttatt 13187  T

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Target: scaffold0320 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 19573 - 19486
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagccta 98  Q
    |||||| ||||||||||||||| |  || || |||| |||||||||||| |||||||| ||||   ||||||| ||||||||||||||    
T  19573 taggggatcaaaattgtagtttttatacttagggggccaaaattgcaaggttttgaaaattaaggggggaaaaatgcactttagccta 19486  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 7431 - 7522
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtt--aatgggaaaagtgcactttagcctatatt 102  Q
    |||||||||||||||||||||| || ||||| ||||||||||| | || ||||| ||| ||  |  |||| |||||||||||||||| ||||    
T  7431 tagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttagagggggacaagtgcactttagcctttatt 7522  T

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Target: scaffold2034 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 310 - 233
Alignment:
Q  21 caaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa--tgggaaaagtgcactttagcc 96  Q
    ||||||| |||||| || ||||| |||  ||||||||||| ||||||||||||||   ||| ||||||||||||||||    
T  310 caaaattatagtttttgtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcactttagcc 233  T

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Target: scaffold2034; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 996 - 1056
Alignment:
Q  15 gggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagttaa 75  Q
    ||||| ||||||| |||||| || |||||||||  ||||||||||| ||||| ||||||||    
T  996 gggggccaaaattatagtttttgtacataagggaccaaaattgcaactttttaaaagttaa 1056  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 18813 - 18730
Alignment:
Q  13 tagggggtcaaaattgtagtttatgcacataaggggtcaaaattgcaagtttttgaaagtta--atgggaaaagtgcactttag 94  Q
    |||| ||||||||||||||||| ||  |||| | ||||||||| |||| ||||| |||||||  | || |||||||||||||||    
T  18813 taggaggtcaaaattgtagtttttgttcataggaggtcaaaatcgcaactttttaaaagttaagagggaaaaagtgcactttag 18730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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