View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9373_low_9 (Length: 301)
Name: NF9373_low_9
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 39859023 - 39858741
Alignment:
| Q |
1 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39859023 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
39858924 |
T |
|
| Q |
101 |
gctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || || |
|
|
| T |
39858923 |
gctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgacat |
39858824 |
T |
|
| Q |
201 |
atattttgatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
283 |
Q |
| |
|
|||||||||||| || |||| |||||||||||| ||||| |||||| ||| | ||| ||||||| | |||||||||||||| |
|
|
| T |
39858823 |
atattttgatctcgtagaccttgacaaagtgaggagtttccgtgttaaaaagcagacgtcatttaacgttttcaaggtatcat |
39858741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 39734556 - 39734815
Alignment:
| Q |
8 |
cagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaat |
107 |
Q |
| |
|
||||| ||||| | |||||||| |||| ||||||| |||||||||| ||||||| | || ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
39734556 |
cagaggctcacctctacactattataagggtgttctaagcttgcttccctagaaactagtaatgtttgtttctttagattcatcttgttaattgctcaat |
39734655 |
T |
|
| Q |
108 |
cagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatatttt |
207 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39734656 |
cagattgtatttatgtttat----actgataactta------------ggtggtacgagatgaagaccttgcacaacagattggaaaggatatatatttt |
39734739 |
T |
|
| Q |
208 |
gatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39734740 |
gatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
39734815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 283
Target Start/End: Complemental strand, 39912883 - 39912624
Alignment:
| Q |
22 |
tacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaatcagattgtattttt |
121 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||| || || || |||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
39912883 |
tacactattataaaggtgttctaagcttgcttcactataaattagtattgtttgt--ctttagaaacatgctgttaattgctcaatcatattgtatttat |
39912786 |
T |
|
| Q |
122 |
atttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccc |
221 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
39912785 |
atttatatatactgataacacataatacttcttaggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagacca |
39912686 |
T |
|
| Q |
222 |
tgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
283 |
Q |
| |
|
|| |||||||| ||||| |||||| ||| | || ||||||| | |||||||||||||| |
|
|
| T |
39912685 |
tgggaaagtgaggagtttctgtgttcaaaagcagacatcatttaacgttttcaaggtatcat |
39912624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 39866631 - 39866411
Alignment:
| Q |
9 |
agagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaatc |
108 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| || |||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
39866631 |
agagactcacctccacactattataaaggtgatctaagcttgcttccctagatatttgttttgtttgtatctttagaaacatgctgttaacggctcaatc |
39866532 |
T |
|
| Q |
109 |
agattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttg |
208 |
Q |
| |
|
|||||||||| | ||||||||||||||| | | ||||||||| |||| ||||||||||||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
39866531 |
agattgtatt----tatatttatactgataataaaaaatacttctcaggttgtacgagatgaagaccttgcaaaacaggttggaaagtatatatattttg |
39866436 |
T |
|
| Q |
209 |
atcttgttgaccctgacaaagtgag |
233 |
Q |
| |
|
|||| || ||| |||||||||||| |
|
|
| T |
39866435 |
atctcgtagactatgacaaagtgag |
39866411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 39869345 - 39869140
Alignment:
| Q |
1 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
100 |
Q |
| |
|
|||||||||||||||||| | |||| | | ||||||||||| ||||| ||||||| |||| ||| |||||||||| ||||||| |||||||||||| | |
|
|
| T |
39869345 |
gaaatggcagagactcacctctacatttttataaaggtgttgtaagctggctttccgagaaatttattttgtttgt--ctttagagacatgctgttaact |
39869248 |
T |
|
| Q |
101 |
gctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatat |
200 |
Q |
| |
|
| |||||||||| ||| | | || || |||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
39869247 |
tcccaatcagattatatctatgttaat----actgataacatataatacttcttaggtagtacgagatgaagacctggcagaacagattggaaaggatat |
39869152 |
T |
|
| Q |
201 |
atattttgatct |
212 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
39869151 |
atgttttgatct |
39869140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39849657 - 39849385
Alignment:
| Q |
1 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctaga-attttgttttgtttgtgtctttagaaacatgctgttaat |
99 |
Q |
| |
|
||||||||||| | | ||||||||||||| |||||||||||| | |||||||| |||||| || |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
39849657 |
gaaatggcagaaaataacttgtacactattataaaggtgttctatgcttgcttccctagatatgttgttttgtttgtgtctttaaaaacatgctcttaat |
39849558 |
T |
|
| Q |
100 |
tgctcaatcagattgt--------------atttttatttatttatactgataac-----------atataatacttctaaggtggtacgagatgaagac |
174 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
39849557 |
tgctcaatcagattgtatttatatttatatatttatatttatttatactgataacttgataagatattataatacttcctaggtggtacgagatgaggac |
39849458 |
T |
|
| Q |
175 |
cttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtgagcagttttcgtgttc |
247 |
Q |
| |
|
||||| |||| |||||||| ||| |||||||||||||||| |||| ||| |||||||| ||||| ||||||| |
|
|
| T |
39849457 |
tttgcagaacaaattggaaatgatttatattttgatcttgtagaccttgataaagtgaggagtttccgtgttc |
39849385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38967079 - 38967318
Alignment:
| Q |
1 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgc-tgttaat |
99 |
Q |
| |
|
|||| ||||||| |||| | |||||||| |||||||||||| || | |||||| |||||| || | || || |||||||||||||| | | ||| ||| |
|
|
| T |
38967079 |
gaaaaggcagaggctcatctctacactattataaaggtgttctaaacatgctttactagaaattaatattattagtgtctttagaaactttcatgtcaat |
38967178 |
T |
|
| Q |
100 |
tgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggata |
199 |
Q |
| |
|
|||||||||| | ||| ||||| |||||| ||||| |||||||||||| |||||| ||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
38967179 |
tgctcaatcataatgt---tttat--atttatgttgata---tataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaaggata |
38967270 |
T |
|
| Q |
200 |
tatattttgatcttgttgaccctgacaaagtgagcagttttcgtgttc |
247 |
Q |
| |
|
| |||||||||||||| |||| |||||| ||||||||||| ||||||| |
|
|
| T |
38967271 |
tgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttc |
38967318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 39899837 - 39899752
Alignment:
| Q |
146 |
atacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtg |
231 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
39899837 |
atacttcttaggtggtacgagacgaagaccttgcaaaacagattggaaaggatatatattttgatcttgtagaccatgacaaagtg |
39899752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 37467827 - 37467679
Alignment:
| Q |
132 |
actgataacatataatacttctaaggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtg |
231 |
Q |
| |
|
||||||||||||| |||||| |||||| ||| |||||||| |||| | |||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
37467827 |
actgataacatatgatactt---aggtggcacgggatgaagatcttggagaacagattggaaaggatatatattttgatcttgtagaacatgacaaagtg |
37467731 |
T |
|
| Q |
232 |
agcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
283 |
Q |
| |
|
| ||||| ||||| | ||| | || ||||||| | |||||||||||||| |
|
|
| T |
37467730 |
cggagtttccgtgtacaaaagcagacaccatttaacgttttcaaggtatcat |
37467679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37467993 - 37467879
Alignment:
| Q |
1 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
100 |
Q |
| |
|
|||| ||||||| ||||| | |||||||| |||||||||||| ||||| ||||||||||||| || ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
37467993 |
gaaaaggcagaggctcacctctacactattataaaggtgttcttagcttcctttcctagaattgagtattgtttgtgtctttataaagatgctgtgaatt |
37467894 |
T |
|
| Q |
101 |
gctcaatcagattgt |
115 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
37467893 |
tctctatcagattgt |
37467879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 36057877 - 36057967
Alignment:
| Q |
155 |
aggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtgagcagttttcgtgt |
245 |
Q |
| |
|
|||||| ||| ||||||||| ||| | ||||| ||||||||||| || ||||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
36057877 |
aggtggcacgggatgaagacattgaagggcagatgggaaaggatatctactttgatcttgtagaccacgacaaagtgagaagtttccgtgt |
36057967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University