View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_1 (Length: 487)
Name: NF9374_1
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_1 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 44 - 487
Target Start/End: Complemental strand, 11119559 - 11119116
Alignment:
| Q |
44 |
ttatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcattt |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119559 |
ttatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcattt |
11119460 |
T |
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| Q |
144 |
caactaaagtaacccacattcatttagattgaactaaccatatccccctccattgattctgaggccacactagcaagatccaattcagaagatttcttgt |
243 |
Q |
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| T |
11119459 |
caactaaagtaacccacattcatttagattgaactaaccatatccccctccattgattctgaggtcacactagcaagatccaattcagaagatttcttgt |
11119360 |
T |
|
| Q |
244 |
taacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaac |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119359 |
taacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaac |
11119260 |
T |
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| Q |
344 |
attttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttga |
443 |
Q |
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| T |
11119259 |
attttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttga |
11119160 |
T |
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| Q |
444 |
agattgttgtagtagttcttgtctaatttatcaggagttgttgg |
487 |
Q |
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| T |
11119159 |
agattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 84 - 487
Target Start/End: Complemental strand, 11111747 - 11111345
Alignment:
| Q |
84 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
183 |
Q |
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|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
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| Q |
184 |
tatccccctccattgattctg---aggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctt |
280 |
Q |
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||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctt |
11111552 |
T |
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| Q |
281 |
tccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatg |
380 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||| |
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| T |
11111551 |
tccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatg |
11111452 |
T |
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| Q |
381 |
gtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggag |
480 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
11111451 |
gtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggag |
11111352 |
T |
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| Q |
481 |
ttgttgg |
487 |
Q |
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| T |
11111351 |
tcgttgg |
11111345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 162 - 487
Target Start/End: Original strand, 10793121 - 10793449
Alignment:
| Q |
162 |
ttcatttagattgaactaaccatatccccctccattgattctgagg---ccacactagcaagatccaattcagaagatttcttgttaacaaaattgcact |
258 |
Q |
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|||||||| |||||||||||||||||||| || | |||||||| || ||| | |||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
10793121 |
ttcatttaaattgaactaaccatatccccatcaaatgattctgtggagaccagagcggcaagatctaactcagaagattttttgttaacaaaattgcatt |
10793220 |
T |
|
| Q |
259 |
gctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttcc |
358 |
Q |
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| || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |||||| || ||||||| || | |
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| T |
10793221 |
gtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttattggc |
10793320 |
T |
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| Q |
359 |
aaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtag |
458 |
Q |
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|||||| || ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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| T |
10793321 |
aaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtcactttgaagcaaaccctttttaacctgaagattgttgtagaag |
10793420 |
T |
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| Q |
459 |
ttcttgtctaatttatcaggagttgttgg |
487 |
Q |
| |
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|||||||| ||| |||||||||| ||||| |
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| T |
10793421 |
ttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 242 - 487
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
242 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
341 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
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| Q |
342 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
441 |
Q |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
442 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
487 |
Q |
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|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 487
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
243 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
342 |
Q |
| |
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|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
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| Q |
343 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
442 |
Q |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
443 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
487 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 358 - 487
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
358 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
457 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
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| Q |
458 |
gttcttgtctaatttatcaggagttgttgg |
487 |
Q |
| |
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||||||||| |||||||||||||| ||||| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 243 - 487
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
243 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
342 |
Q |
| |
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|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
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| Q |
343 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
442 |
Q |
| |
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| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
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| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
443 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
487 |
Q |
| |
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|||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
377 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
435 |
Q |
| |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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