View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9374_2 (Length: 480)

Name: NF9374_2
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9374_2
NF9374_2
[»] chr6 (11 HSPs)
chr6 (11-480)||(26616827-26617310)
chr6 (11-480)||(26722755-26723238)
chr6 (418-480)||(26811431-26811493)
chr6 (430-480)||(27214351-27214401)
chr6 (430-480)||(27234827-27234877)
chr6 (150-202)||(26811169-26811221)
chr6 (148-201)||(26848238-26848291)
chr6 (150-202)||(26974611-26974663)
chr6 (223-276)||(26974753-26974804)
chr6 (150-199)||(27667862-27667911)
chr6 (368-468)||(27665332-27665432)
[»] chr2 (2 HSPs)
chr2 (370-480)||(17993887-17993997)
chr2 (150-201)||(17994256-17994307)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Original strand, 26616827 - 26617310
Alignment:
Q  11 cacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagttt 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616827 cacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagttt 26616926  T
Q  111 aagaactcaaatcaataacatgcctgtggagcagcagagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacaga 210  Q
    ||||||||||||||||||||||||    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616927 aagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacaga 26617026  T
Q  211 ttagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgttt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617027 ttagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgttt 26617126  T
Q  311 ctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcgatgcgttcgt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  26617127 ctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcgatgcgttcgt 26617226  T
Q  399 cagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 480  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26617227 cagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttc 26617310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Original strand, 26722755 - 26723238
Alignment:
Q  11 cacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagttt 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722755 cacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagttt 26722854  T
Q  111 aagaactcaaatcaataacatgcctgtggagcagcagagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacaga 210  Q
    ||||||||||||||||||||||||    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722855 aagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacaga 26722954  T
Q  211 ttagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgttt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722955 ttagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgttt 26723054  T
Q  311 ctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcgatgcgttcgt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  26723055 ctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcgatgcgttcgt 26723154  T
Q  399 cagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 480  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26723155 cagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttc 26723238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 26811431 - 26811493
Alignment:
Q  418 actcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 480  Q
    |||||||| |||||||||||  |||||||||||||||||||||| |||||| |||||||||||    
T  26811431 actcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttc 26811493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 27214351 - 27214401
Alignment:
Q  430 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 480  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  27214351 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttc 27214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 27234877 - 27234827
Alignment:
Q  430 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttc 480  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  27234877 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttc 27234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 26811169 - 26811221
Alignment:
Q  150 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 202  Q
    |||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  26811169 ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgatc 26811221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 26848238 - 26848291
Alignment:
Q  148 agataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 201  Q
    |||||||||||||||| |||||||||| | || ||||||||| |||||||||||    
T  26848238 agataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 26848291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 26974611 - 26974663
Alignment:
Q  150 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 202  Q
    |||||||||||||| ||| |||||| | || ||||||||||||||||||||||    
T  26974611 ataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgatc 26974663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 26974753 - 26974804
Alignment:
Q  223 gaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactctta 276  Q
    |||| ||||||||| ||||||||||||  ||||||||||| |||||||||||||    
T  26974753 gaaggaagtttcgctactaatgttaaa--aatggacactcataaataactctta 26974804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
Q  150 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg 199  Q
    ||||||||||||||||| ||||||  | || |||||||||||||||||||    
T  27667911 ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg 27667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 27665432 - 27665332
Alignment:
Q  368 tctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaagg 467  Q
    ||||||||||||||| |||||||| |||| | |||||  ||||  | || |||||||  || |||||||| || |||||||| ||||||| ||| |||||    
T  27665432 tctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaagg 27665333  T
Q  468 a 468  Q
    |    
T  27665332 a 27665332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 17993997 - 17993887
Alignment:
Q  370 tcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggag 469  Q
    ||||||| |||||||||||||| |||| | |||||  ||||  | ||||||||||  || |||||||| ||||||||||||||||||| ||| || |||     
T  17993997 tcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaa 17993898  T
Q  470 tccgaaccttc 480  Q
    | |||||||||    
T  17993897 ttcgaaccttc 17993887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 17994307 - 17994256
Alignment:
Q  150 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 201  Q
    |||||||||||||| |||||||||  | || |||||||||||||||||||||    
T  17994307 ataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgat 17994256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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