View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_3 (Length: 399)
Name: NF9374_3
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_3 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 53679491 - 53679605
Alignment:
| Q |
1 |
gttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcaat |
100 |
Q |
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| T |
53679491 |
gttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcggt |
53679590 |
T |
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| Q |
101 |
gttgattaagcaggt |
115 |
Q |
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| T |
53679591 |
gttgattaagcaggt |
53679605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 53679678 - 53679794
Alignment:
| Q |
188 |
gggagattgagaatgatgatttcatgaaaagtagaaatatgtgaagattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaaga |
287 |
Q |
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| T |
53679678 |
gggagattgagaatgacgatttcatgaaaagtagaaataagtgaagattgttaaatgaatggtatttggatttacatggaagagaagaaagggaagaaga |
53679777 |
T |
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| Q |
288 |
tctatacacacaggttc |
304 |
Q |
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| T |
53679778 |
tctatacacacaggttc |
53679794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 47185776 - 47185712
Alignment:
| Q |
312 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag |
376 |
Q |
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| T |
47185776 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag |
47185712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 47198315 - 47198251
Alignment:
| Q |
312 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag |
376 |
Q |
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| T |
47198315 |
tcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatag |
47198251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 47212396 - 47212340
Alignment:
| Q |
320 |
gagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag |
376 |
Q |
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| T |
47212396 |
gagtaaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatag |
47212340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 19266212 - 19266145
Alignment:
| Q |
233 |
gattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctatacacacag |
300 |
Q |
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| T |
19266212 |
gattgttgaatgaatggaatttggatttacagagaagagaagaaaaggaagaagatccgtacacacag |
19266145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 32375255 - 32375198
Alignment:
| Q |
238 |
ttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctataca |
295 |
Q |
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| T |
32375255 |
ttgaatgaatgatatttggatttacagagaagagaagaaaaggaagaagatccataca |
32375198 |
T |
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