View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_4 (Length: 370)
Name: NF9374_4
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_4 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 42122392 - 42122065
Alignment:
| Q |
1 |
taattgaatgatcttagtgttgcagattgaactatacgcag----attcagaagcttttgaattagctggtaattaaggtgacggtcacttggttgttat |
96 |
Q |
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| T |
42122392 |
taattgaatgatcttagtgttgcagattgaactatacgcaggcagattcagaagcttttgaattagctggtaattaaggtgacggtcacttggttgttat |
42122293 |
T |
|
| Q |
97 |
taagttgaagttcttatatatatatcnnnnnnnngctacatgatctcactctcacaactttccatttttatttaagagagatttaggtaaagaaaaatgc |
196 |
Q |
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| T |
42122292 |
taagttgaagttcttatatatcttt----tttttgctacatgatctcactctcacaactttccatttttatttaagagagatttaggtaaagaaaaatgc |
42122197 |
T |
|
| Q |
197 |
acttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggtaaattatttcatgttctaatttaattaatgcaattac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42122196 |
acttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggtaaattatttcatgttctaatttaattaatgcaattac |
42122097 |
T |
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| Q |
297 |
atctttgaaattaactgatctgcacaggttct |
328 |
Q |
| |
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| T |
42122096 |
atctttgaaattaactgatctgtgcaggttct |
42122065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 41862991 - 41863069
Alignment:
| Q |
181 |
aggtaaagaaaaatgcacttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggta |
260 |
Q |
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| T |
41862991 |
aggtaaagaaaa-tgcacttctgatatgcaatcacaggagtgacattgattggcttattggatgggtcttggctcaggta |
41863069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 36552981 - 36553020
Alignment:
| Q |
220 |
gtgatattgattggcttattggatgggtcttagctcaggt |
259 |
Q |
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| T |
36552981 |
gtgatattgattggcttgttggatgggttttagctcaggt |
36553020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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