View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_5 (Length: 354)
Name: NF9374_5
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_5 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 576511 - 576857
Alignment:
| Q |
1 |
tatcacttgtccattgcttcagaaattgttcattagggattggaaagaccatgatgatgaaaatgatcaccatgacaacgaggaagaagtagaa---gaa |
97 |
Q |
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| T |
576511 |
tatcacttgtccattgcttcagaaattgttcattagggattggaaagaccatgatgatgaagatgatcaccacgacaacgaggaagaagtagaagaagaa |
576610 |
T |
|
| Q |
98 |
cttgctgaggaattaagtaatgatgtcaatgatattactgcagtggaagatctaaattatcatcatggccttataagaatcctttcaaatgaactggtat |
197 |
Q |
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| T |
576611 |
cttgctgaggaattaaataatgatgtcaatgatattactgcagtggaaaatctaaattatcatcatggccttataagaatcctttcaaatgaactggtat |
576710 |
T |
|
| Q |
198 |
cgttcacatatgacggtgatctcatgaatgattattccttattttacacattctcagtctcgaatgcaactattaagcttcatgaacaacacaataatat |
297 |
Q |
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| T |
576711 |
ctttcacatatgacggtgatctcatgaatgattattccttattttacacattctcagtctcgaatgcaactattaagcttcatgaacaacacaataatat |
576810 |
T |
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| Q |
298 |
gttgcatgatggacattttatctacaaacttttcatagccctctctg |
344 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
576811 |
gttgcatgctggacattttatctacaaacttttcatagccctttctg |
576857 |
T |
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