View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9374_6 (Length: 332)

Name: NF9374_6
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9374_6
NF9374_6
[»] chr4 (8 HSPs)
chr4 (35-276)||(13091472-13091713)
chr4 (1-276)||(22591590-22591865)
chr4 (1-129)||(13091716-13091844)
chr4 (1-129)||(44743649-44743777)
chr4 (183-276)||(28117507-28117600)
chr4 (183-276)||(14642890-14642983)
chr4 (183-260)||(24304426-24304503)
chr4 (183-260)||(23628212-23628289)
[»] chr6 (4 HSPs)
chr6 (1-276)||(26332529-26332804)
chr6 (16-276)||(15668468-15668734)
chr6 (183-276)||(24050587-24050680)
chr6 (200-270)||(5123137-5123206)
[»] chr1 (5 HSPs)
chr1 (159-276)||(6577490-6577607)
chr1 (1-81)||(38835441-38835521)
chr1 (183-255)||(45589011-45589083)
chr1 (168-276)||(38317054-38317162)
chr1 (199-267)||(45668574-45668642)
[»] chr3 (4 HSPs)
chr3 (1-81)||(36332072-36332152)
chr3 (168-276)||(3591736-3591844)
chr3 (168-276)||(9785947-9786055)
chr3 (183-260)||(12997406-12997483)
[»] chr8 (3 HSPs)
chr8 (183-276)||(39995950-39996043)
chr8 (183-276)||(15309743-15309836)
chr8 (183-276)||(15490112-15490205)
[»] chr7 (3 HSPs)
chr7 (183-276)||(8792066-8792159)
chr7 (183-276)||(38035960-38036053)
chr7 (2-75)||(10094926-10094999)
[»] chr5 (9 HSPs)
chr5 (183-276)||(42110051-42110144)
chr5 (183-276)||(6928943-6929036)
chr5 (183-276)||(25820641-25820734)
chr5 (183-276)||(27177088-27177181)
chr5 (183-276)||(32262333-32262426)
chr5 (183-276)||(42322242-42322335)
chr5 (183-276)||(15975868-15975961)
chr5 (183-260)||(31958997-31959074)
chr5 (185-260)||(39782341-39782416)
[»] chr2 (1 HSPs)
chr2 (183-276)||(7232391-7232484)
[»] scaffold0438 (1 HSPs)
scaffold0438 (1-69)||(2887-2955)
[»] scaffold0237 (1 HSPs)
scaffold0237 (183-276)||(6009-6102)
[»] scaffold0005 (1 HSPs)
scaffold0005 (183-276)||(174309-174402)
[»] scaffold0481 (1 HSPs)
scaffold0481 (183-233)||(6196-6246)
[»] scaffold0198 (1 HSPs)
scaffold0198 (183-276)||(15866-15966)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 13091713 - 13091472
Alignment:
Q  35 caacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatttgaactcgaatcttcattaatgtttctttcttct 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13091713 caacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatttgaactcgaatcttcattaatgtttctttcttct 13091614  T
Q  135 tctcgttcggacatatacccagtgatttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaa 234  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13091613 tctcgttcggacatatatccagtgatttggtcccatttgttgaattcctcatcttgaacaccacatattcgaataaagttatgaagtgctgttgttgcaa 13091514  T
Q  235 ctatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  13091513 ctatgatcttttcttgtttgattagtggaaatggtctcatat 13091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 22591865 - 22591590
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 100  Q
    ||||| ||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||     
T  22591865 cacattataaacttgaatgattttcgttttccaacaacttagtggctatttgatttctagctctatccatgtggctcccatcttgtactcttaaattata 22591766  T
Q  101 tgaactcgaatcttcattaatgtttctttcttcttctcgttcggacatatacccagtgatttgatcccatttgttgaattcctcatcttgaacgccacat 200  Q
    |||||| ||||||||| |  |||||||||||||||||||||||  |||||| |||| |||||| |||||||||||||| |||||||||||||||||||||    
T  22591765 tgaacttgaatcttcagtggtgtttctttcttcttctcgttcgtgcatatatccagggatttggtcccatttgttgaactcctcatcttgaacgccacat 22591666  T
Q  201 attcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  22591665 attcgaatgaagttacgaagtgttgttgttgcaactatgatcttttcttgcttgattagtggaaatggtctcatat 22591590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13091844 - 13091716
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13091844 cacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 13091745  T
Q  101 tgaactcgaatcttcattaatgtttcttt 129  Q
    |||||||||||||||||||||||||||||    
T  13091744 tgaactcgaatcttcattaatgtttcttt 13091716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 44743777 - 44743649
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44743777 cacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 44743678  T
Q  101 tgaactcgaatcttcattaatgtttcttt 129  Q
    |||||||||||||||||||||||||||||    
T  44743677 tgaactcgaatcttcattaatgtttcttt 44743649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 28117507 - 28117600
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  28117507 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 28117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 14642983 - 14642890
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  14642983 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 14642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 24304426 - 24304503
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 260  Q
    ||||||| ||| ||||| |||||||||||||| || |||| ||||| |||||||||||||||||  ||||||| ||||    
T  24304426 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgctgcaactatgatcttttgttgtttgaatagt 24304503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 23628289 - 23628212
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 260  Q
    ||||||| ||| ||||| ||| |||||||||| || |||| ||||||| |||||||||||||||  ||||||| ||||    
T  23628289 tcatcttcaactccacacatttgaataaagttgtggagtgttgttgttacaactatgatcttttgttgtttgaatagt 23628212  T

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Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 26332529 - 26332804
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatt 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |     
T  26332529 cacatcataaacttgaacgatttttgtcttccaacaacttagtggctatttgatttctagctctatccatgtagctcacatcttgtactcttaaattgta 26332628  T
Q  101 tgaactcgaatcttcattaatgtttctttcttcttctcgttcggacatatacccagtgatttgatcccatttgttgaattcctcatcttgaacgccacat 200  Q
    |||||||||||||||| |||||||||||||||||||  |||| | |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26332629 tgaactcgaatcttcagtaatgtttctttcttcttcatgttcaggcatatatccaggaatttgatcccatttgttgaattcctcatcttgaacgccacat 26332728  T
Q  201 attcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26332729 attcgaatgaagttatgaagtgttgttgttgcaactatgatcttttcttgtttgattagtggaaatggtctcatat 26332804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 15668468 - 15668734
Alignment:
Q  16 aacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccatcttgtactcttaaattatttgaactcgaatcttc 115  Q
    |||||||||||||||| | ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||    
T  15668468 aacgatttttgttttcaaacaacttagtggctatttaatttctagctctatccatatagctcccatcttgtactcttaaattatatgtacttgaatcttc 15668567  T
Q  116 attaatgtttctttcttcttctcgttcggacatatacccagtgatttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagtta 215  Q
    |||||||||||||||||||||||||||||  ||||| |||| |||||| || ||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  15668568 attaatgtttctttcttcttctcgttcgggtatatagccagggatttggtcacatttgttgaattcctcatcttgagtgccacatattcgaatgaagtta 15668667  T
Q  216 tgaag------tgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||| |      |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||    
T  15668668 tgacgtgttgttgctgttgttacaactattatcttttcttgtttgattagtggaaatggtctcatat 15668734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 24050587 - 24050680
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||    
T  24050587 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgtaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 24050680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 5123206 - 5123137
Alignment:
Q  200 tattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtc 270  Q
    ||||| |||||||||| |||| | |||||||||||||||||||||||   |||||||||||| ||||||||    
T  5123206 tattcaaataaagttacgaag-gttgttgttgcaactatgatcttttgtagtttgattagtgaaaatggtc 5123137  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 6577490 - 6577607
Alignment:
Q  159 atttgatcccatttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgatta 258  Q
    ||||| ||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  6577490 atttggtccaatttgttgaactcctcatcttgaacaccacatattcgaatgaagttatgaagtgctattgttgcaactatgatcttttcttgtttgatta 6577589  T
Q  259 gtggaaatggtctcatat 276  Q
    |||| |||||||||||||    
T  6577590 gtgggaatggtctcatat 6577607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38835521 - 38835441
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccat 81  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  38835521 cacatcataaacttgaacgatttttgttttccaacaacttagtggctatttgatttctagctctgtccatgtagcttccat 38835441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 45589083 - 45589011
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttga 255  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  |||||||    
T  45589083 tcatcttcaactccacacattcgaataaagttgtggagtgatgttgttgcaactatgatcttttgttgtttga 45589011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 38317054 - 38317162
Alignment:
Q  168 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 267  Q
    |||||||| ||||| ||||||| || | ||||  |||  ||||| |||||||||| |||| |||||||| |||||||||  | ||| ||||||||||||     
T  38317054 catttgttaaattcttcatcttcaatgtcacactttcacataaaattatgaagtgttgttattgcaactttgatcttttgttatttcattagtggaaatt 38317153  T
Q  268 gtctcatat 276  Q
    |||||||||    
T  38317154 gtctcatat 38317162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 45668642 - 45668574
Alignment:
Q  199 atattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 267  Q
    ||||| |||| ||||||| ||||| | |||| ||||||||||||||||  ||||||||||||| |||||    
T  45668642 atattggaattaagttataaagtgttattgtcgcaactatgatcttttattgtttgattagtgaaaatg 45668574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36332152 - 36332072
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagctcccat 81  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36332152 cacatcataaacttgaacgatttttgttttccaacaacttagtggctattcgatttctagctctatccatgttgctcccat 36332072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 3591844 - 3591736
Alignment:
Q  168 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 267  Q
    |||||||| ||||| ||||||| ||  |||||  |||||||||| ||||||||||| ||||||||||||||||||||||  ||||| || | ||||||||    
T  3591844 catttgttaaattcttcatcttcaataccacactttcgaataaaattatgaagtgccgttgttgcaactatgatcttttgttgtttcatcaatggaaatg 3591745  T
Q  268 gtctcatat 276  Q
    |||||||||    
T  3591744 gtctcatat 3591736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 9785947 - 9786055
Alignment:
Q  168 catttgttgaattcctcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatg 267  Q
    |||||||| ||||| ||||||| ||  |||||  |||||||||| ||||||||||| ||||||||||||||||||||||  ||||| || | ||||||||    
T  9785947 catttgttaaattcttcatcttcaataccacactttcgaataaaattatgaagtgccgttgttgcaactatgatcttttgttgtttcatcaatggaaatg 9786046  T
Q  268 gtctcatat 276  Q
    |||||||||    
T  9786047 gtctcatat 9786055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 12997406 - 12997483
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 260  Q
    ||||||| ||| |||||||||| ||||||||| || |||| |||||||||||||||||| ||||  ||||||||||||    
T  12997406 tcatcttcaactccacatattctaataaagttgtggagtgttgttgttgcaactatgattttttgttgtttgattagt 12997483  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 39996043 - 39995950
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  39996043 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtggaaatggtcgcatat 39995950  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 15309836 - 15309743
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||  | || | ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  15309836 tcatcttcaactccacacattcgaataaaaatgtggactgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 15309743  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 15490205 - 15490112
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||  | || | ||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  15490205 tcatcttcaactccacacattcgaataaaaatgtggactgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 15490112  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 8792159 - 8792066
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  8792159 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 8792066  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 38036053 - 38035960
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  38036053 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 38035960  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 10094926 - 10094999
Alignment:
Q  2 acatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatccatgtagc 75  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||| | ||| || ||||||| |||||||    
T  10094926 acatcacaaacttgaacgatttttgttttccaacaacttaatggctatttggtttttacctctatcaatgtagc 10094999  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 42110144 - 42110051
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  42110144 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 42110051  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 6928943 - 6929036
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||    
T  6928943 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgtaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 6929036  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 25820734 - 25820641
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||||| |||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  25820734 tcatcttcaactccacacattcgaataaagttgtggagtgcttttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcacatat 25820641  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 27177088 - 27177181
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| || ||||| |||||    
T  27177088 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaattggtcgcatat 27177181  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 32262333 - 32262426
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  32262333 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 32262426  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 42322335 - 42322242
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||||||||||| |||||||||| ||||  ||||||||||||| |||||||| |||||    
T  42322335 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttccaactatgatattttgttgtttgattagtgaaaatggtcgcatat 42322242  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 15975961 - 15975868
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| | ||| ||| |||||||||| || |||| |||||||||||||||||||||||  | ||||||||||| |||||||| |||||    
T  15975961 tcatcttcaactctacacatttgaataaagttgtggagtgttgttgttgcaactatgatcttttgttatttgattagtgaaaatggtcgcatat 15975868  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 31958997 - 31959074
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 260  Q
    ||||||| ||| ||||| |||||||||||||| || |||| | ||||||||||||||| | |||  ||||||||||||    
T  31958997 tcatcttcaactccacacattcgaataaagttgtggagtgttattgttgcaactatgaccatttgttgtttgattagt 31959074  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 39782416 - 39782341
Alignment:
Q  185 atcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagt 260  Q
    ||||| ||| ||||| ||||||||||| || || | |  |||||||||||||||||||||||  ||||||||||||    
T  39782416 atcttcaactccacacattcgaataaaattgtggactattgttgttgcaactatgatcttttgttgtttgattagt 39782341  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 7232484 - 7232391
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  7232484 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 7232391  T

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Target: scaffold0438 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2955 - 2887
Alignment:
Q  1 cacatcataaacttgaacgatttttgttttccagcaacttagtggctattcgatttctagctctatcca 69  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  2955 cacatcataaacttgaacgatttttgttttccaacaacttagtgactatttgatttctagctctatcca 2887  T

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Target: scaffold0237 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 6102 - 6009
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  6102 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 6009  T

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Target: scaffold0005 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 174309 - 174402
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgcaactatgatcttttcctgtttgattagtggaaatggtctcatat 276  Q
    ||||||| ||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||  ||||||||||||| |||||||| |||||    
T  174309 tcatcttcaactccacacattcgaataaagttgtggagtgttgttgttgcaactatgatcttttgttgtttgattagtgaaaatggtcgcatat 174402  T

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Target: scaffold0481 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 6246 - 6196
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttgttgca 233  Q
    ||||||| ||| ||||| |||||||||||||| || |||||||||||||||    
T  6246 tcatcttcaactccacacattcgaataaagttgtggagtgctgttgttgca 6196  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 15866 - 15966
Alignment:
Q  183 tcatcttgaacgccacatattcgaataaagttatgaagtgctgttg-------ttgcaactatgatcttttcctgtttgattagtggaaatggtctcata 275  Q
    |||||||||||  |||| |||||||||||||| || |||| |||||       ||||||||||||||||||  |||| |||||||| |||||||| ||||    
T  15866 tcatcttgaacttcacacattcgaataaagttgtggagtgttgttgttgcaacttgcaactatgatcttttgttgttcgattagtgaaaatggtcgcata 15965  T
Q  276 t 276  Q
    |    
T  15966 t 15966  T

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