View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9374_low_10 (Length: 263)
Name: NF9374_low_10
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 14620744 - 14620505
Alignment:
| Q |
19 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14620744 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
14620645 |
T |
|
| Q |
119 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgcttttgagtcattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14620644 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgcttttgagtcattg |
14620545 |
T |
|
| Q |
219 |
tttttgcattaagcgcgttcttttctgattctctgcttct |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14620544 |
tttttgcattaagcgcattcttttctgattctctgcttct |
14620505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 17709452 - 17709691
Alignment:
| Q |
19 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17709452 |
ttaatgactttaaatgaattgtgaattggtgttgtaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
17709551 |
T |
|
| Q |
119 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgctttt-gagtcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| | |
|
|
| T |
17709552 |
cctaaagaagtgaagaccaatagaggtatatacccctttttcagttttatgtattgcttaacatagcatgttctattcagttattgcttttcgattca-t |
17709650 |
T |
|
| Q |
218 |
gtttttgcattaagcgcgttcttttctgattctctgcttct |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17709651 |
gtttttgcattaagcgtgttcttttctgattctctgcttct |
17709691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University