View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9374_low_12 (Length: 259)

Name: NF9374_low_12
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9374_low_12
NF9374_low_12
[»] chr4 (7 HSPs)
chr4 (9-239)||(34455771-34456001)
chr4 (16-235)||(11475679-11475897)
chr4 (197-236)||(9167300-9167339)
chr4 (197-236)||(15017640-15017679)
chr4 (197-236)||(15019280-15019319)
chr4 (197-236)||(17266695-17266734)
chr4 (197-236)||(39488147-39488186)
[»] chr3 (5 HSPs)
chr3 (16-236)||(33757790-33758009)
chr3 (77-236)||(13179768-13179930)
chr3 (77-236)||(13184426-13184588)
chr3 (197-236)||(5553587-5553626)
chr3 (200-236)||(22271249-22271285)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-236)||(288998-289217)
[»] scaffold0065 (1 HSPs)
scaffold0065 (16-236)||(33600-33819)
[»] chr7 (5 HSPs)
chr7 (79-236)||(16157062-16157218)
chr7 (16-236)||(21368465-21368684)
chr7 (13-233)||(22707513-22707725)
chr7 (197-236)||(9595434-9595473)
chr7 (197-236)||(9646397-9646436)
[»] scaffold0671 (1 HSPs)
scaffold0671 (16-236)||(2160-2379)
[»] chr8 (6 HSPs)
chr8 (16-236)||(16417376-16417595)
chr8 (16-236)||(18774124-18774344)
chr8 (67-208)||(17459729-17459868)
chr8 (197-236)||(18446241-18446280)
chr8 (197-236)||(20730989-20731028)
chr8 (204-236)||(17462373-17462405)
[»] chr1 (4 HSPs)
chr1 (16-236)||(37260443-37260662)
chr1 (197-236)||(6473889-6473928)
chr1 (197-236)||(22062142-22062181)
chr1 (199-236)||(20190431-20190468)
[»] scaffold0359 (1 HSPs)
scaffold0359 (16-236)||(8587-8807)
[»] chr5 (4 HSPs)
chr5 (20-236)||(22821121-22821336)
chr5 (197-236)||(244438-244477)
chr5 (197-236)||(29950232-29950271)
chr5 (197-236)||(29951870-29951909)
[»] chr6 (8 HSPs)
chr6 (16-236)||(21299216-21299437)
chr6 (179-236)||(12639529-12639586)
chr6 (58-162)||(9344211-9344313)
chr6 (197-236)||(18553452-18553491)
chr6 (197-236)||(18781868-18781907)
chr6 (197-236)||(20417550-20417589)
chr6 (197-236)||(20419636-20419675)
chr6 (197-236)||(30518282-30518321)
[»] chr2 (5 HSPs)
chr2 (16-236)||(44794780-44795001)
chr2 (16-180)||(21465089-21465252)
chr2 (16-126)||(44794574-44794683)
chr2 (197-236)||(6050220-6050259)
chr2 (197-236)||(15409914-15409953)
[»] scaffold0002 (1 HSPs)
scaffold0002 (77-211)||(127083-127220)
[»] scaffold0076 (1 HSPs)
scaffold0076 (196-236)||(54886-54926)
[»] scaffold0585 (1 HSPs)
scaffold0585 (197-236)||(870-909)
[»] scaffold0146 (1 HSPs)
scaffold0146 (197-236)||(6730-6769)
[»] scaffold0096 (1 HSPs)
scaffold0096 (197-236)||(22612-22651)
[»] scaffold0083 (1 HSPs)
scaffold0083 (197-236)||(33332-33371)
[»] scaffold0010 (1 HSPs)
scaffold0010 (197-236)||(136872-136911)
[»] scaffold0075 (1 HSPs)
scaffold0075 (197-234)||(25758-25795)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 34456001 - 34455771
Alignment:
Q  9 taaatataggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaaaggaacacgaaaattatgtattgggattaatttttgac 108  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  34456001 taaatataggcacaaaacataagaaatagactgaaaatattgtgaatgaaatgatgtgcaaaaggaacatgaaaattatatattgggattaatttttgac 34455902  T
Q  109 aattgtttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccaca 208  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  34455901 aattgtttgagttgaaaacgataatttggatttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaatggagggtttagggacgccaca 34455802  T
Q  209 ctttctaatcctagaaaatgataagtctgtg 239  Q
    |||||||||| ||||||||||||||| ||||    
T  34455801 ctttctaatcgtagaaaatgataagtttgtg 34455771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 11475897 - 11475679
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    ||||||||||| ||||||||  |||  ||||||||  ||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| ||||||  |    
T  11475897 aggcacaaaacttaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 11475800  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| ||||| |||||||||||||||    
T  11475799 ttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcagacaagaaatggaatggagagtttagagacgccacactttct 11475700  T
Q  215 aatcctagaaaatgataagtc 235  Q
    |||||||||||||||||||||    
T  11475699 aatcctagaaaatgataagtc 11475679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 9167339 - 9167300
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  9167339 agggacgccacactttctaatccaagaaagtgataagtct 9167300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 15017640 - 15017679
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  15017640 agggacgccacactttctaatccaagaaagtgataagtct 15017679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 15019280 - 15019319
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  15019280 agggacgccacactttctaatccaagaaagtgataagtct 15019319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 17266695 - 17266734
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  17266695 agggacgccacactttctaatccaagaaagtgataagtct 17266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 39488147 - 39488186
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  39488147 agggacgccacactttctaatccaagaaagtgataagtct 39488186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33757790 - 33758009
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||||||| |||||||||||||||||||||||||||| |||||| ||    
T  33757790 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaa-acgaaaattatgtattgggattaatttt-gacaatggt 33757887  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    ||||||||||||  | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  33757888 ttgagttgaaaattataatttggttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttct 33757987  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  33757988 aatcctagaaaatgataagtct 33758009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 13179768 - 13179930
Alignment:
Q  77 acgaaaattatgtattgggattaatttttgacaattgtttg-agttgaaaac-gagaatttgggttt--gaataggtgtttaggctgatttgtggattca 172  Q
    |||||||||||||||||||||||||||| ||||||  |||| |||||||||  |||||||||| |||  |||| ||||||||||||||| ||||| ||||    
T  13179768 acgaaaattatgtattgggattaatttt-gacaatgatttggagttgaaaaatgagaatttggttttttgaattggtgtttaggctgatctgtggtttca 13179866  T
Q  173 aacaagaaatggaattgagaatttagggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13179867 aacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 13179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 13184426 - 13184588
Alignment:
Q  77 acgaaaattatgtattgggattaatttttgacaattgtttg-agttgaaaac-gagaatttgggttt--gaataggtgtttaggctgatttgtggattca 172  Q
    |||||||||||||||||||||||||||| ||||||  |||| |||||||||  |||||||||| |||  |||| ||||||||||||||| ||||| ||||    
T  13184426 acgaaaattatgtattgggattaatttt-gacaatgatttggagttgaaaaatgagaatttggttttttgaattggtgtttaggctgatctgtggtttca 13184524  T
Q  173 aacaagaaatggaattgagaatttagggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13184525 aacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 13184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 5553626 - 5553587
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  5553626 agggacgccacactttctaatccaagaaagtgataagtct 5553587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 22271285 - 22271249
Alignment:
Q  200 gacgccacactttctaatcctagaaaatgataagtct 236  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  22271285 gacgccacactttctaatcccagaaagtgataagtct 22271249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 289217 - 288998
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||| ||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| ||||||  |    
T  289217 aggctcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 289120  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  289119 ttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttct 289020  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  289019 aatcctagaaaatgataagtct 288998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33600 - 33819
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  || |||||  ||||||| | ||||| |||||||| |||||||||||| |||||||||| |||||||||||  |    
T  33600 aggcacaaaacacaagaaatgaactaaaattattgttaatgaaagggtgtgccaaaaggaa-acgaaaattatgcattgggatta-tttttgacaatgat 33697  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||||||    
T  33698 ttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatgaagagtttagggacgccacactttct 33797  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  33798 aatcctagaaaatgataagtct 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 16157218 - 16157062
Alignment:
Q  79 gaaaattatgtattgggattaatttttgacaattgtttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaag 178  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  16157218 gaaaattatgtattgggattaatttt-gacaatgatttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaaacaag 16157120  T
Q  179 aaatggaattgagaatttagggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  16157119 aaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 16157062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 21368465 - 21368684
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| | |||||  |||  ||||||||  ||||||| | ||||| |||||||| |||||||||||||||||||||||||||| ||||||  |    
T  21368465 aggcacaaaacacaggaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaa-acgaaaattatgtattgggattaatttt-gacaatgat 21368562  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    ||||||||||||  ||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||    
T  21368563 ttgagttgaaaattagaatttagttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggatgccacactttct 21368662  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  21368663 aatcctagaaaatgataagtct 21368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 22707513 - 22707725
Alignment:
Q  13 tataggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaat 111  Q
    ||||||||||||||| ||||||| || || ||||||||  |    |||||||||| |||||||| | |||||||||||||||||||||||||| || |||    
T  22707513 tataggcacaaaacacaagaaatggaatgaaaatattgttat---aatgatgtgccaaaaggaaaa-gaaaattatgtattgggattaatttt-gataat 22707607  T
Q  112 tgtttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactt 211  Q
      ||||| |    || |||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||| ||| || | |||||||||||| |||||    
T  22707608 gatttgaat----aatgagaatttggttttgaattggtgtttaggttgatttgtggtttcaaacaagaaatgcaatagaaagtttagggacgcctcactt 22707703  T
Q  212 tctaatcctagaaaatgataag 233  Q
    |||||||||||||| |||||||    
T  22707704 tctaatcctagaaactgataag 22707725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 9595434 - 9595473
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  9595434 agggacgccacactttctaatccaagaaagtgataagtct 9595473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 9646397 - 9646436
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  9646397 agggacgccacactttctaatccaagaaagtgataagtct 9646436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2379 - 2160
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||| ||| |||||||| ||||||||||||||||||| ||||||  |    
T  2379 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaaaggtgtgccaaaaagaa-acgaaaatcatgtattgggattaatttt-gacaatgat 2282  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||  ||| |||||||||||||||||||||    
T  2281 ttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaaacaagaattggaatgcagagtttagggacgccacactttct 2182  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  2181 aatcctagaaaatgataagtct 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 16417376 - 16417595
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||| ||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||| ||| ||||||||||||||||| |||||||||| ||||||  |    
T  16417376 aggcgcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgagattaatttt-gacaatgat 16417473  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||    
T  16417474 ttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaatcaagaaatggaatggagagtttagggacgccacactttct 16417573  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  16417574 aatcctagaaaatgataagtct 16417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 18774124 - 18774344
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaa-aggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| || | ||| |||||||||||||||||||||||||||| ||||||  |    
T  18774124 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 18774221  T
Q  115 ttgagttgaaaac-gagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttc 213  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  18774222 ttgagttgaaaaatgagaatttggttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttc 18774321  T
Q  214 taatcctagaaaatgataagtct 236  Q
    |||||||||||||||||||||||    
T  18774322 taatcctagaaaatgataagtct 18774344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 17459729 - 17459868
Alignment:
Q  67 caaaaggaacacgaaaattatgtattgggattaatttttgacaattgtttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtg 166  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  17459729 caaaaggaa-acgaaaattatgtattgggattaatttt-gacaatgatttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtg 17459826  T
Q  167 gattcaaacaagaaatggaattgagaatttagggacgccaca 208  Q
    | |||||||||||||| |||| |||| |||||||||||||||    
T  17459827 gtttcaaacaagaaatagaatggagagtttagggacgccaca 17459868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 18446280 - 18446241
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  18446280 agggacgccacactttctaatccaagaaagtgataagtct 18446241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 20731028 - 20730989
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  20731028 agggacgccacactttctaatccaagaaagtgataagtct 20730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 17462373 - 17462405
Alignment:
Q  204 ccacactttctaatcctagaaaatgataagtct 236  Q
    |||||||||||||||||||||||| ||||||||    
T  17462373 ccacactttctaatcctagaaaattataagtct 17462405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 37260662 - 37260443
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| ||||||  |    
T  37260662 aggcacaaaacacaagaaatgaactaaaaatattgtcaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 37260565  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttct 214  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||||| |||| |||||||||||| |||||| |||| |||||||||||||||||||||    
T  37260564 ttgagttgaaaatgagaatttgattttgaattggtgtttaggctgattcgtggtttcaaacaagaattggaatggagagtttagggacgccacactttct 37260465  T
Q  215 aatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||    
T  37260464 aatcctagaaaatgataagtct 37260443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 6473928 - 6473889
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  6473928 agggacgccacactttctaatccaagaaagtgataagtct 6473889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 22062142 - 22062181
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  22062142 agggacgccacactttctaatccaagaaagtgataagtct 22062181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 20190431 - 20190468
Alignment:
Q  199 ggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  20190431 ggacgccacactttctaatccaagaaactgataagtct 20190468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 8587 - 8807
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaa-aggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| || | ||| |||||||||||||||||||||||||||| ||||||  |    
T  8587 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 8684  T
Q  115 ttgagttgaaaac-gagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttc 213  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  8685 ttgagttgaaaaatgagaatttggttttgaattggtgtttaggctgatatgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttc 8784  T
Q  214 taatcctagaaaatgataagtct 236  Q
    |||||||||||||||||||||||    
T  8785 taatcctagaaaatgataagtct 8807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 22821121 - 22821336
Alignment:
Q  20 acaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgtttga 118  Q
    |||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||||||| |||||||||||||||||||||||||||| | ||||   ||||    
T  22821121 acaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaa-acgaaaattatgtattgggattaattttgg-caatgaattga 22821218  T
Q  119 gttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacactttctaatc 218  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  22821219 gttgaaaatgagaatttggttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttaggaacgccacactttctaatc 22821318  T
Q  219 ctagaaaatgataagtct 236  Q
     |||||||||||||||||    
T  22821319 ttagaaaatgataagtct 22821336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 244438 - 244477
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  244438 agggacgccacactttctaatccaagaaagtgataagtct 244477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 29950271 - 29950232
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  29950271 agggacgccacactttctaatccaagaaagtgataagtct 29950232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 29951909 - 29951870
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  29951909 agggacgccacactttctaatccaagaaagtgataagtct 29951870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 21299216 - 21299437
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaa-aggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| || | ||| |||||||||||||||||||||||||||| ||||||  |    
T  21299216 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 21299313  T
Q  115 ttgagttgaaaac--gagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacacttt 212  Q
    ||||||||||||   |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  21299314 ttgagttgaaaaaatgagaatttggttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacacttt 21299413  T
Q  213 ctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||||    
T  21299414 ctaatcctagaaaatgataagtct 21299437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 12639586 - 12639529
Alignment:
Q  179 aaatggaattgagaatttagggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  12639586 aaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 12639529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 9344313 - 9344211
Alignment:
Q  58 aatgatgtgcaaaaggaacacgaaaattatgtattgggattaatttttgacaattgtttgagttgaaaacgagaatttgggtttgaataggtgtttaggc 157  Q
    |||||||||| ||| ||| |||||||||||||||| ||||| ||||| ||| ||  |||||||||||||||||||||||| ||||||| ||||||| |||    
T  9344313 aatgatgtgccaaaagaa-acgaaaattatgtattaggattgatttt-gacgatgatttgagttgaaaacgagaatttggttttgaattggtgttttggc 9344216  T
Q  158 tgatt 162  Q
    |||||    
T  9344215 tgatt 9344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 18553491 - 18553452
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  18553491 agggacgccacactttctaatccaagaaagtgataagtct 18553452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 18781907 - 18781868
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  18781907 agggacgccacactttctaatccaagaaagtgataagtct 18781868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 20417550 - 20417589
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  20417550 agggacgccacactttctaatccaagaaagtgataagtct 20417589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 20419636 - 20419675
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  20419636 agggacgccacactttctaatccaagaaagtgataagtct 20419675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 30518282 - 30518321
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  30518282 agggacgccacactttctaatccaagaaagtgataagtct 30518321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 44795001 - 44794780
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaa-aggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| || | ||| |||||||||||||||||||||||||||| ||||||  |    
T  44795001 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 44794904  T
Q  115 ttgagttgaaaac--gagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaaatggaattgagaatttagggacgccacacttt 212  Q
    ||||||||||||   |||||||||| ||||||| ||||||||||||||| | ||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  44794903 ttgagttgaaaaaatgagaatttggttttgaattggtgtttaggctgatctatggtttcaaacaagaaatggaatggagagtttagggacgccacacttt 44794804  T
Q  213 ctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||||    
T  44794803 ctaatcctagaaaatgataagtct 44794780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 21465089 - 21465252
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgc-aaaaggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| ||||||  |    
T  21465089 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgggattaatttt-gacaatgat 21465186  T
Q  115 ttgagttgaaaacgagaatttgggtttgaataggtgtttaggctgatttgtggattcaaacaagaa 180  Q
    |||||||||||| |||||||||  ||||||| ||||||||||||||||||||| ||||||||||||    
T  21465187 ttgagttgaaaatgagaatttgattttgaattggtgtttaggctgatttgtggtttcaaacaagaa 21465252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 44794574 - 44794683
Alignment:
Q  16 aggcacaaaacataagaaatagactggaaatattgcgaatgaaatgatgtgcaaa-aggaacacgaaaattatgtattgggattaatttttgacaattgt 114  Q
    |||||||||||| |||||||  |||  ||||||||  ||||||| | ||||| || | ||| |||||||||||||||||||||||| ||||||||||  |    
T  44794574 aggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaa-acgaaaattatgtattgggattaa-ttttgacaatgat 44794671  T
Q  115 ttgagttgaaaa 126  Q
    ||||||||||||    
T  44794672 ttgagttgaaaa 44794683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 6050220 - 6050259
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  6050220 agggacgccacactttctaatccaagaaagtgataagtct 6050259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 15409953 - 15409914
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  15409953 agggacgccacactttctaatccaagaaagtgataagtct 15409914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 127220 - 127083
Alignment:
Q  77 acgaaaattatgtattgggattaatttttgacaattgtttg-agttgaaaac-gagaatttgggttt--gaataggtgtttaggctgatttgtggattca 172  Q
    |||||||||||||||||||||||||||| ||||||  |||| |||||||||  |||||||||| |||  |||| ||||||||||||||| ||||| ||||    
T  127220 acgaaaattatgtattgggattaatttt-gacaatgatttggagttgaaaaatgagaatttggttttttgaattggtgtttaggctgatctgtggtttca 127122  T
Q  173 aacaagaaatggaattgagaatttagggacgccacactt 211  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  127121 aacaagaaatggaatggagagtttagggacgccacactt 127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 54926 - 54886
Alignment:
Q  196 tagggacgccacactttctaatcctagaaaatgataagtct 236  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  54926 tagggacgccacactttctaatccaagaaagtgataagtct 54886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 870 - 909
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  870 agggacgccacactttctaatccaagaaagtgataagtct 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 6769 - 6730
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  6769 agggacgccacactttctaatccaagaaagtgataagtct 6730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 22612 - 22651
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  22612 agggacgccacactttctaatccaagaaagtgataagtct 22651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 33371 - 33332
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  33371 agggacgccacactttctaatccaagaaattgataagtct 33332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 136911 - 136872
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagtct 236  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  136911 agggacgccacactttctaatccaagaaagtgataagtct 136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 25758 - 25795
Alignment:
Q  197 agggacgccacactttctaatcctagaaaatgataagt 234  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  25758 agggacgccacactttctaatccaagaaagtgataagt 25795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University