View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_low_13 (Length: 240)
Name: NF9374_low_13
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_13 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 25816239 - 25816461
Alignment:
| Q |
16 |
gttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaaac |
115 |
Q |
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| T |
25816239 |
gttacaaatgcagcatttgtgacaatgaccttcacacacactgcacaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaaac |
25816338 |
T |
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| Q |
116 |
ccaccaggaaacacgccgcgttactgcaacgtgaacaggtttgtataccactgcaaatcatgtggatttgacctccacccaagtagcacgaacgttgggg |
215 |
Q |
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| T |
25816339 |
ccaccaggaaacacgccgcgttactgcgacgtgaacgggtttgtataccactgcaaatcatgtggatttgacctccacccatgttgcgcgaacgtcgggg |
25816438 |
T |
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| Q |
216 |
aaatgaaactttacctttataga |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
25816439 |
aaatgaaactttacctttataga |
25816461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 25802146 - 25802239
Alignment:
| Q |
16 |
gttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcacctt |
109 |
Q |
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| T |
25802146 |
gttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaatgcacctt |
25802239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 25802299 - 25802351
Alignment:
| Q |
144 |
acgtgaacaggtttgtataccactgcaaatcatgtggatttgacctccaccca |
196 |
Q |
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| T |
25802299 |
acgtgaacgggtttgtttaccactgcaaatcctgtgggttcgacctccaccca |
25802351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 112385 - 112288
Alignment:
| Q |
16 |
gttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttctacacaaaatgcaccttccaa |
113 |
Q |
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|||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||| || | || ||||||||||||||||||||| |
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| T |
112385 |
gttaaaaatgcagcatctgcgactacgaccttcatacacactgcgcaataccttccaccacactcttcgatccattttacacaaaatgcaccttccaa |
112288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 112230 - 112181
Alignment:
| Q |
146 |
gtgaacaggtttgtataccactgcaaatcatgtggatttgacctccaccc |
195 |
Q |
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| T |
112230 |
gtgaacgggtttgtttaccactgcaaatcctgtgggttcgacctccaccc |
112181 |
T |
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