View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9374_low_2 (Length: 540)
Name: NF9374_low_2
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 11119628 - 11119116
Alignment:
| Q |
18 |
agacataacttgtgacggaaagagaggatatactataat-----gaaaattacttagnnnnnnnnngg-ttatcttgcacacataaagcacataacatac |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
11119628 |
agacataacttgtgacggaaagagaggatatactataatataatgaaaattacttagaaaaaaaaaagattatcttgcacacataaagcacataacatac |
11119529 |
T |
|
| Q |
112 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11119528 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
11119429 |
T |
|
| Q |
212 |
aactaaccatatccccctccattgattctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119428 |
aactaaccatatccccctccattgattctgaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcc |
11119329 |
T |
|
| Q |
312 |
tttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119328 |
tttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatg |
11119229 |
T |
|
| Q |
412 |
ctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11119228 |
ctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttat |
11119129 |
T |
|
| Q |
512 |
caggagttgttgg |
524 |
Q |
| |
|
| ||||||||||| |
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|
| T |
11119128 |
cgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 121 - 524
Target Start/End: Complemental strand, 11111747 - 11111345
Alignment:
| Q |
121 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
220 |
Q |
| |
|
|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
|
| Q |
221 |
tatccccctccattgattctg---aggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctt |
317 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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|
| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctt |
11111552 |
T |
|
| Q |
318 |
tccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatg |
417 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||| |
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|
| T |
11111551 |
tccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatg |
11111452 |
T |
|
| Q |
418 |
gtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggag |
517 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
11111451 |
gtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggag |
11111352 |
T |
|
| Q |
518 |
ttgttgg |
524 |
Q |
| |
|
| ||||| |
|
|
| T |
11111351 |
tcgttgg |
11111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 199 - 524
Target Start/End: Original strand, 10793121 - 10793449
Alignment:
| Q |
199 |
ttcatttagattgaactaaccatatccccctccattgattctgagg---ccacactagcaagatccaattcagaagatttcttgttaacaaaattgcact |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | |||||||| || ||| | |||||||| || ||||||||||| ||||||||||||||||| | |
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|
| T |
10793121 |
ttcatttaaattgaactaaccatatccccatcaaatgattctgtggagaccagagcggcaagatctaactcagaagattttttgttaacaaaattgcatt |
10793220 |
T |
|
| Q |
296 |
gctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttcc |
395 |
Q |
| |
|
| || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |||||| || ||||||| || | |
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|
| T |
10793221 |
gtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttattggc |
10793320 |
T |
|
| Q |
396 |
aaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtag |
495 |
Q |
| |
|
|||||| || ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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|
| T |
10793321 |
aaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtcactttgaagcaaaccctttttaacctgaagattgttgtagaag |
10793420 |
T |
|
| Q |
496 |
ttcttgtctaatttatcaggagttgttgg |
524 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |
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|
| T |
10793421 |
ttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 279 - 524
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
279 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
378 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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|
| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
379 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
478 |
Q |
| |
|
| ||||| | | | | || ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| |||||||| ||| |
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|
| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
479 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
524 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 280 - 524
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
280 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
379 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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|
| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
|
| Q |
380 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
479 |
Q |
| |
|
|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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|
| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
480 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
524 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 395 - 524
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
395 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
494 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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|
| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
495 |
gttcttgtctaatttatcaggagttgttgg |
524 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 280 - 524
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
280 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
379 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
|
|
| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
380 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
479 |
Q |
| |
|
| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
480 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
524 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
414 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
472 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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|
| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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