View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_low_3 (Length: 479)
Name: NF9374_low_3
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 17003925 - 17004372
Alignment:
| Q |
14 |
attattcttttaatttgtggttttggatagtaaaaaggatttcaccttgagctattggtgaatatgcaatcaatgtaatcccaagttcatcacaggcttt |
113 |
Q |
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| T |
17003925 |
attattcttttaatatgtggttttgaatagtaaaaaggatttcaccttgagctattggtgaatatgcaatcaatgtaatcccaagttcatcacaggcttt |
17004024 |
T |
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| Q |
114 |
cttcacaccattttcttcggggaccctataaatgaggctgtagtttacttggtttgaagccaatggaatacctctcttcttgagctgtttatatgcttcg |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17004025 |
cttcacaccattttcttcagggaccctataaatgaggctgtagtttacttggtttgaagccaatggaatacctctcttcttgagctgtttatatgcttcg |
17004124 |
T |
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| Q |
214 |
cgtagtcggttttctgtataaatagaaaaaaggaatgttaggtacttctgatcatagaactagaacttgttccataaaaagtattatggtacaagttagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17004125 |
cgtagtcggttttctgtataaatagaaaaaaggaatgttaggtacttctgatcatagaactagaactagttccataaaaagtattatggtacaagttagt |
17004224 |
T |
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| Q |
314 |
catagttttgcataaaattgaagtttggaagactccaagacaaataatctatgaaccgccaacaaatcattgacaccggacaagacaatgacaccgacac |
413 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17004225 |
catagttttgcataaaattgaagtttagaagactccaagacaaataatctatgaaccgccaacaaatcattgacaccagacaagacaatgacaccgacac |
17004324 |
T |
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| Q |
414 |
cgatagtagtttgagaaaatagacgtgaatatgtaatgcgtcggtgct |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17004325 |
cgatagtagtttgagaaaatagacgtgaatatgtaatgtgtcggtgct |
17004372 |
T |
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