View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9374_low_4 (Length: 350)
Name: NF9374_low_4
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 350
Target Start/End: Original strand, 44622943 - 44623243
Alignment:
| Q |
46 |
atttcattttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatctataatta |
145 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622943 |
atttcatgttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatctataatta |
44623042 |
T |
|
| Q |
146 |
aacaatagtgcacaatcgaatttaaggatcactgtgttttcttagttgtcgaaaggaatctttaattgttgggaagtataggatgtttgtaggatcttat |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44623043 |
aacaatagtgcacaatcaaatttaaggatcactgtgttttcttagttgtcgaaaggaatct----ttgttgggaagtataggatgtttgtaggatcttat |
44623138 |
T |
|
| Q |
246 |
accttctttgcttgtattgcaagtatctcaattggaacaaattattaaaaccctacttcttgttattatttttcatgcttttgttatatagatttccgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44623139 |
accttctttgcttgtattgcaagtatctcaattggaacaaattattaaaaccctacttcttgttattatttttcatgcttttgttatatagatttccatg |
44623238 |
T |
|
| Q |
346 |
ccttt |
350 |
Q |
| |
|
||||| |
|
|
| T |
44623239 |
ccttt |
44623243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University