View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9374_low_6 (Length: 309)

Name: NF9374_low_6
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9374_low_6
NF9374_low_6
[»] chr4 (3 HSPs)
chr4 (119-289)||(48848418-48848588)
chr4 (1-114)||(48848159-48848272)
chr4 (15-109)||(46784529-46784623)
[»] chr7 (2 HSPs)
chr7 (123-291)||(1578893-1579061)
chr7 (1-114)||(1579211-1579324)
[»] scaffold0214 (1 HSPs)
scaffold0214 (120-247)||(9212-9339)
[»] chr2 (2 HSPs)
chr2 (119-245)||(26791565-26791691)
chr2 (1-114)||(26791306-26791419)
[»] chr5 (1 HSPs)
chr5 (17-82)||(31814647-31814712)
[»] chr6 (1 HSPs)
chr6 (174-220)||(35233785-35233831)
[»] chr3 (3 HSPs)
chr3 (21-94)||(17718427-17718500)
chr3 (21-94)||(19019656-19019729)
chr3 (21-82)||(53608381-53608442)
[»] scaffold0036 (1 HSPs)
scaffold0036 (249-289)||(76281-76321)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 119 - 289
Target Start/End: Original strand, 48848418 - 48848588
Alignment:
Q  119 agatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaat 218  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48848418 agatgacgttctcttgttaactaaagctcgcagctctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaagtaat 48848517  T
Q  219 cttcataagtgtagagctttttattcaactggtactccacatagcaaaatcaccaatctcacctctatatc 289  Q
     |||| |||| |||||||||||||||  | |||||||| || || ||||||||||||||||||||||||||    
T  48848518 attcacaagtctagagctttttattcttcaggtactcctcagagaaaaatcaccaatctcacctctatatc 48848588  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 48848159 - 48848272
Alignment:
Q  1 ttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcc 100  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  48848159 ttggattcccagatgccacaatcaatctcatcatgcattgtgtttgttcttcaactttctccatcctctagaatggaaacaagttgcctccctttcatcc 48848258  T
Q  101 tactcatgggctca 114  Q
    ||||||||||||||    
T  48848259 tactcatgggctca 48848272  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 46784623 - 46784529
Alignment:
Q  15 gccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcctactcatgg 109  Q
    ||||| ||||||||||| ||||||||| || | || |||||||||||  |||| ||||||||||| || ||||| || ||  | |||||||||||    
T  46784623 gccaccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatgg 46784529  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 1579061 - 1578893
Alignment:
Q  123 gacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaatcttc 222  Q
    |||||||||||||| ||||||| ||| || ||||| |||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  1579061 gacgttctcttgtttactaaagttcgaagctctcatcttagattcatcagagatttgttcaatcgtttcatcaaggtttcagggttaaaaattaatcttc 1578962  T
Q  223 ataagtgtagagctttttattcaactggtactccacatagcaaaatcaccaatctcacctctatatctg 291  Q
    | |||| |||||||||||||||  |  ||||||| ||||||||||||||||||||||||||||||||||    
T  1578961 acaagtctagagctttttattcttcaagtactcctcatagcaaaatcaccaatctcacctctatatctg 1578893  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 1579324 - 1579211
Alignment:
Q  1 ttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcc 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  1579324 ttggattcccagatgccactatcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcc 1579225  T
Q  101 tactcatgggctca 114  Q
    ||||||||||||||    
T  1579224 tactcatgggctca 1579211  T

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Target: scaffold0214 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 9212 - 9339
Alignment:
Q  120 gatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaatc 219  Q
    ||||| |||||||| ||||| |||||   |||  |||||||| | ||||||||||| ||||||||||| ||||||||  | || || || ||||||||||    
T  9212 gatgatgttctcttattcaccaaagcaaacagcactcagcttcgcttcatcagagacttgtttgatcgcttcagcaaattctccggtttgaaaattaatc 9311  T
Q  220 ttcataagtgtagagctttttattcaac 247  Q
    |||| |||| ||||||||||||||||||    
T  9312 ttcacaagtctagagctttttattcaac 9339  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 26791565 - 26791691
Alignment:
Q  119 agatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaat 218  Q
    |||||| |||||||| ||||| |||||   |||  |||||||| | |||||||| || ||||||||||| ||||||||  | || || || |||||||||    
T  26791565 agatgatgttctcttattcaccaaagccaacagcactcagcttcgcttcatcagggacttgtttgatcgtttcagcaaattctccggtttgaaaattaat 26791664  T
Q  219 cttcataagtgtagagctttttattca 245  Q
    ||||| |||| ||||||||||||||||    
T  26791665 cttcacaagtctagagctttttattca 26791691  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26791306 - 26791419
Alignment:
Q  1 ttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcc 100  Q
    |||| ||||| ||| |||| ||||||||||| ||||||||  || |||| || |  |||||||| || ||||||||||| | ||||||||| ||  | ||    
T  26791306 ttggcttcccggataccaccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcc 26791405  T
Q  101 tactcatgggctca 114  Q
    ||||||||| ||||    
T  26791406 tactcatggcctca 26791419  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 31814647 - 31814712
Alignment:
Q  17 cactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaa 82  Q
    ||||||||||||||| ||||||||| |||| || || ||||| |||||||| |||||||| |||||    
T  31814647 cactatcaagctcatcatgcattgtgtttcctcatctactttttctatcctttggaatggtaacaa 31814712  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 35233785 - 35233831
Alignment:
Q  174 gatttgtttgatcggttcagcaaggtttcagggttaaaaattaatct 220  Q
    ||||| |||||| | |||||||||| |||||||||||||||||||||    
T  35233785 gatttatttgatagtttcagcaaggcttcagggttaaaaattaatct 35233831  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 17718500 - 17718427
Alignment:
Q  21 atcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctt 94  Q
    ||||||||||| ||||||||| |||| || || || ||||||||  | ||||||||||||||  ||||||||||    
T  17718500 atcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctccctt 17718427  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 19019729 - 19019656
Alignment:
Q  21 atcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctt 94  Q
    ||||||||||| ||||||||| |||| || || || ||||||||  | ||||||||||||||  ||||||||||    
T  19019729 atcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctccctt 19019656  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 53608442 - 53608381
Alignment:
Q  21 atcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaa 82  Q
    ||||||||||| ||||||||| |||| || || || |||||||| || ||||||||||||||    
T  53608442 atcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaa 53608381  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 76281 - 76321
Alignment:
Q  249 ggtactccacatagcaaaatcaccaatctcacctctatatc 289  Q
    |||||||| ||| |||||||||||||||||||||| |||||    
T  76281 ggtactcctcatggcaaaatcaccaatctcacctccatatc 76321  T

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