View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_low_7 (Length: 300)
Name: NF9374_low_7
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 42206611 - 42206892
Alignment:
| Q |
1 |
tgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaac |
100 |
Q |
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| T |
42206611 |
tgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaac |
42206710 |
T |
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| Q |
101 |
agctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagtaaaatatgaagaga |
200 |
Q |
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| T |
42206711 |
agctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatatcaattttttcagcagcagcagagtaaaatatgaagaga |
42206810 |
T |
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| Q |
201 |
atgtttctttacataacaaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttag |
282 |
Q |
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| T |
42206811 |
atgtttctttacataacaaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttag |
42206892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 42213460 - 42213725
Alignment:
| Q |
17 |
cgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaacagctggttgccttttt |
116 |
Q |
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||||||||| || |||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| ||| | ||| |||| ||||||| |||| | |
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| T |
42213460 |
cgtggtgaccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcaattctggtgcgaacatctggttggctttct |
42213559 |
T |
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| Q |
117 |
ggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagtaaaatatgaagagaatgtttctttacataa |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||| | || ||||| |||||||| || ||||||| ||| ||||||||||| ||||||| ||| |
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| T |
42213560 |
ggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaa |
42213659 |
T |
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| Q |
217 |
caaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttag |
282 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42213660 |
cagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttag |
42213725 |
T |
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