View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9374_low_8 (Length: 275)
Name: NF9374_low_8
Description: NF9374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9374_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 3312989 - 3313110
Alignment:
| Q |
82 |
ctccataaaagacagagacccactaaacatataatataacataacacttatagactcgtagtgatggatgaccacattgctgaccttattgaaacaacat |
181 |
Q |
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| T |
3312989 |
ctccataaaagacagagacccactaaacatataatataacgtaacacttatagactcgtagtgatggaggaccacattgctgaccttattgaaacaacat |
3313088 |
T |
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| Q |
182 |
ataaaattatggtatattacta |
203 |
Q |
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|||||||||||||||||||||| |
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| T |
3313089 |
ataaaattatggtatattacta |
3313110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 3312903 - 3312946
Alignment:
| Q |
4 |
tacatccatagttaaagggcttacaagttacataattaaaggac |
47 |
Q |
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| T |
3312903 |
tacatccatagttaaagggcttacaagttacataattaaaggac |
3312946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 24537620 - 24537500
Alignment:
| Q |
83 |
tccataaaagacagagacccactaaacatataatataacataacacttatagactcgtagtgatggatgaccacattgctgaccttattgaaacaacata |
182 |
Q |
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||||||||||||| ||| |||||| |||||||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
24537620 |
tccataaaagacaaagatccactagacatataatataccataacactcatagactcatagtgatggggggccacattgctgaccttattgaaacatcata |
24537521 |
T |
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| Q |
183 |
taaaattatggtatattacta |
203 |
Q |
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|||||| |||||||||||||| |
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| T |
24537520 |
taaaatcatggtatattacta |
24537500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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