View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9375_2 (Length: 331)
Name: NF9375_2
Description: NF9375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9375_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 86 - 331
Target Start/End: Original strand, 32062504 - 32062749
Alignment:
| Q |
86 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
185 |
Q |
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| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
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| Q |
186 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
285 |
Q |
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| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
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| Q |
286 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgc |
331 |
Q |
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| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgc |
32062749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
99 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
198 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
199 |
atgatga |
205 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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