View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9375_3 (Length: 330)
Name: NF9375_3
Description: NF9375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9375_3 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 26453139 - 26453464
Alignment:
| Q |
1 |
gcagaagttacgatctgataggctgagcaatggaaaggggtgtgccgatcaatcttagagcttctaaagcactggaacaaattttttgttcttagctgct |
100 |
Q |
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| T |
26453139 |
gcagaagttacgatctgataggctgaacaatggaaaggggtgtgccgatcaatcttggagcttctaaagcactggaacaaatattttgttcttagctgct |
26453238 |
T |
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| Q |
101 |
aaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctccaatgctagaactc------------attttactttatgtaggc |
188 |
Q |
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| T |
26453239 |
aaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctccaatgctagaactcaacacacttcctattttactttatgtaggc |
26453338 |
T |
|
| Q |
189 |
tcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtactttttctaatgcagtcagtgctagaacatgtt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26453339 |
tcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttaccttttctgtactttttctaatgcagtcagtgctagaacatgtt |
26453438 |
T |
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| Q |
289 |
ctagtgggagaatttttctccacagg |
314 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
26453439 |
ctagtgggagaattgttctccacagg |
26453464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 47680588 - 47680531
Alignment:
| Q |
84 |
ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaacca |
141 |
Q |
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| T |
47680588 |
ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaacca |
47680531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 47680488 - 47680406
Alignment:
| Q |
171 |
attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctg |
253 |
Q |
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||||||||||||||||| |||| | |||||||||| || |||| ||||||||||||||| | ||| |||||| ||||||| |
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| T |
47680488 |
attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg |
47680406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
| Q |
75 |
gaacaaattttttgttcttagctgctaaa |
103 |
Q |
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| T |
11727230 |
gaacaaattttttgttcttagctgctaaa |
11727258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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