View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9375_low_1 (Length: 500)
Name: NF9375_low_1
Description: NF9375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9375_low_1 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 12480 - 11996
Alignment:
| Q |
1 |
tttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttcccaccacctcacgagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12480 |
tttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttcccaccacctcacgagcc |
12381 |
T |
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| Q |
101 |
caagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttatgaagggttttaggagagccataggggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12380 |
caagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttatgaagggttttaggagagccataggggc |
12281 |
T |
|
| Q |
201 |
ctatacaagtttccattaagaaaaaatctccgataccactttgatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12280 |
ctatacaagtttccattaagaaaaaatctccgataccactttgatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatccta |
12181 |
T |
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| Q |
301 |
tcatggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12180 |
tcatggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcg |
12081 |
T |
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| Q |
401 |
gaactacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgat |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12080 |
gaactacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgat |
11996 |
T |
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Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 243 - 442
Target Start/End: Complemental strand, 16577067 - 16576868
Alignment:
| Q |
243 |
gatagatccatcaacaaacataaaatagaaagatgcacaagcttctttccctatcctatcatggactgaattccgggtgggtttctttaactcatcgcga |
342 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| |
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| T |
16577067 |
gatagatccatcatcaattgtaaaatagaaagatgcacaagcttctttccctatcctatcatggactgaatttcgggttgatttctttaactcatcacga |
16576968 |
T |
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| Q |
343 |
tttcaaataaaatattccgggtttcataccaatgctcgaagcagctcctctatccgcggaactacaactaaacctggagcttatctggttaccttaataa |
442 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||||| | |||||||||| |
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| T |
16576967 |
tttcaaataaaatatttcgggtttcataccaatactcgaagcaactcctctatccacgaaactacaactaaacctggagcttatctgataaccttaataa |
16576868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 9628815 - 9628897
Alignment:
| Q |
403 |
actacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgat |
485 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
9628815 |
actacaactaaacctggagcttatctagttaccttaataatcatggacaaaatctgctctatatctaggcagtcggttttgat |
9628897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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