View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9375_low_3 (Length: 427)
Name: NF9375_low_3
Description: NF9375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9375_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 45836061 - 45835646
Alignment:
| Q |
1 |
aatcatgtcagcatgtataaagtagtaattagatatatgacacgtcttaaacaacagaactatctgaaatcattaccagaattttcactggtaacttgtt |
100 |
Q |
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| T |
45836061 |
aatcatgtcagcatgtataaagtagtaattagatatatgacacgtcttaaacaacagaactatctgaaatcattagcagaattttcactggtaacttgtt |
45835962 |
T |
|
| Q |
101 |
gcttttccacctatttaataaagtggttatcttgtcatcttttatagttcaaatggtacctacaattatatttttacctacagtaactcatctaaatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45835961 |
gcttttccacctatttaataaagtggttatcttgtcatctttcatagttcaaatggtacctacaattatatttttacctacagtaactcatctaaatctg |
45835862 |
T |
|
| Q |
201 |
ccgtactactgaacaacgaaggaacctactcgtttataaaattgtgttctttcccaactttgaccatatctatagaacaagagtcatataaaaaatcaca |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
45835861 |
tcgtactactgaacaacgtaggaacctactcgtttataaaattgtgttctttcccaactttgatcatatctatagaacaagagtcatagaaaaaatcaca |
45835762 |
T |
|
| Q |
301 |
accaaagcattgaatagcgaataatgtattcaactgcatctagaactttatgtctcgtttaatggtcaggataggacagggacgaataggatctaatcat |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45835761 |
accaaagcattgaatagtgaataatgtattcaactgcatctagaactttatgtctcgtttaatggtcaggataggacagggacgaataggatctaatcat |
45835662 |
T |
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| Q |
401 |
accttgtttttgatgt |
416 |
Q |
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|||||||||||||||| |
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| T |
45835661 |
accttgtttttgatgt |
45835646 |
T |
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