View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9375_low_7 (Length: 222)

Name: NF9375_low_7
Description: NF9375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9375_low_7
NF9375_low_7
[»] chr4 (7 HSPs)
chr4 (14-113)||(6087263-6087362)
chr4 (14-113)||(32728189-32728288)
chr4 (14-109)||(6131721-6131816)
chr4 (18-113)||(18886059-18886153)
chr4 (17-96)||(28700934-28701013)
chr4 (17-98)||(56220369-56220450)
chr4 (183-222)||(18885950-18885989)
[»] chr1 (7 HSPs)
chr1 (14-113)||(7380589-7380688)
chr1 (14-113)||(26687908-26688007)
chr1 (14-96)||(12705025-12705107)
chr1 (14-108)||(1094876-1094969)
chr1 (14-87)||(15739491-15739564)
chr1 (30-93)||(24179400-24179463)
chr1 (14-108)||(9039925-9040019)
[»] chr2 (6 HSPs)
chr2 (15-113)||(5869197-5869295)
chr2 (14-112)||(18242361-18242459)
chr2 (14-113)||(26290204-26290302)
chr2 (14-113)||(32629132-32629231)
chr2 (14-104)||(10251039-10251129)
chr2 (14-113)||(44731189-44731288)
[»] chr7 (4 HSPs)
chr7 (15-112)||(39607924-39608021)
chr7 (14-113)||(44613951-44614050)
chr7 (14-113)||(38918830-38918929)
chr7 (14-113)||(39921428-39921527)
[»] chr6 (5 HSPs)
chr6 (14-113)||(1112710-1112809)
chr6 (17-113)||(1522387-1522483)
chr6 (14-113)||(31533656-31533758)
chr6 (14-96)||(2346272-2346354)
chr6 (14-66)||(20397369-20397421)
[»] chr8 (4 HSPs)
chr8 (14-113)||(45231391-45231489)
chr8 (17-113)||(38153757-38153853)
chr8 (14-66)||(34592270-34592322)
chr8 (183-222)||(38153915-38153954)
[»] chr5 (3 HSPs)
chr5 (18-108)||(11876519-11876609)
chr5 (14-113)||(15506927-15507026)
chr5 (14-104)||(33902822-33902912)
[»] scaffold0092 (1 HSPs)
scaffold0092 (14-65)||(45284-45335)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 6087263 - 6087362
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6087263 gagacttttatatttagttcaaattcatacaaatgcttgggattgaacctcaagaccgatgactcaagtgcattctattttactactaaactattccaag 6087362  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 32728189 - 32728288
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  32728189 gagacttttatatttggttcaaattcacacaaatgctcgggattgaacctcaagaccgatgactcaagtgcattatattttactactaaaatattccaag 32728288  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 6131816 - 6131721
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattc 109  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  6131816 gagacttttatatttggttcaaattcacacaaatgctcgggattgaacctcaagaccgattactcaaatgcattctattttactactaaactattc 6131721  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18886153 - 18886059
Alignment:
Q  18 cttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||| ||| ||||||| ||||||| | ||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||    
T  18886153 cttttatatttggtttaaattcacacaaatgcttggg-ttgaacctcaagaccgatgactcaagtgcattttattctactactaaactattccaag 18886059  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 28701013 - 28700934
Alignment:
Q  17 acttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttac 96  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| |  || |||||| ||||||||||||    
T  28701013 acttttatatttggttcaaattcacacaaatgttcgggattgaacgtcaataccaaatacccaagtgaattctattttac 28700934  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 56220450 - 56220369
Alignment:
Q  17 acttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttacta 98  Q
    |||||||||||| ||||||||||| ||||||| |  ||||||||||| || ||| | ||| ||| | |||||||||||||||    
T  56220450 acttttatatttggttcaaattcacacaaatgcttaggattgaacctgaagaccaaagacccaattacattctattttacta 56220369  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 18885989 - 18885950
Alignment:
Q  183 aggctcctaagatttcgaggtccggcaccgtagctcacct 222  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  18885989 aggctcctaagattgcgaggtccggcaccgtaactcacct 18885950  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 7380589 - 7380688
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7380589 gagacttttatatttggttcaaattcatacaaatgctcgggattgaacctcaagaccgatgactcaagtgcattctattttactactaaactattccaag 7380688  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 26687908 - 26688007
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||| ||||||| |  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26687908 gagacttttatatttggttcaaattcacacaaatgctttggattgaacctcaagaccgatgactcaaatgcattctattttactactaaactattccaag 26688007  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 12705025 - 12705107
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttac 96  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||||||||| ||| | ||||||| ||||||||| |||||    
T  12705025 gagacttttatatttcgttcaaattcacacaaatgtttggaattgaacctcaagaccaaagactcaaatgcattctactttac 12705107  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 1094876 - 1094969
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactatt 108  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||||| ||| | ||| |||| ||||| |  ||||| |||||||||||    
T  1094876 gagatttttatatttggttcaaattcacacaaatgttcgggattgaacctcaagaccaaggacccaagggcattat-gtttaccactaaactatt 1094969  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 15739491 - 15739564
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcatt 87  Q
    ||||||||||||||| ||||||||||| ||||||| |||| ||||||||| || ||| |  |||||||||||||    
T  15739491 gagacttttatattttgttcaaattcacacaaatgctcggaattgaacctaaagaccaaaaactcaagtgcatt 15739564  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 24179400 - 24179463
Alignment:
Q  30 gttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattt 93  Q
    ||||||||| | ||||||||||| ||||||||||||| ||  | ||||||| ||||||||||||    
T  24179400 gttcaaatttacacaaatgttcgagattgaacctcaagactaaggactcaaatgcattctattt 24179463  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 9039925 - 9040019
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactatt 108  Q
    ||||||||||||||| ||| | ||||| | ||||| ||| |||||||  |||| ||| | |||  ||||||||||| |||||| |||||||||||    
T  9039925 gagacttttatatttggttaagattcacaaaaatgctcgagattgaatttcaagaccaaggacataagtgcattctcttttaccactaaactatt 9040019  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 5869197 - 5869295
Alignment:
Q  15 agacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5869197 agacttttatatttggttcaaattcacacaaatgctcgggattgaacctcaagaccgatgactcaagtgcattctattttactactaaactattccaag 5869295  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 18242361 - 18242459
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaa 112  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18242361 gagacttttatatttggttcaaattcacacaaatgtccgggattgaacctcaagaccgatgactcaagtgcattctattttactactaaactattccaa 18242459  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 26290302 - 26290204
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||||||  |||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  26290302 gagacttttatatttgattcaaattcacacaaatgctcggg-ttgaacctcaagaccgatgactcaagtgcattctattttattactaaactattccaag 26290204  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 32629132 - 32629231
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||||||| |||||||||| ||||||| ||| | ||||||||||| | |||||||||||||||||||||||| || ||||||||||||||||    
T  32629132 gagacttttatatttaattcaaattcacacaaatgctcgaggttgaacctcaagatcgatgactcaagtgcattctatttaaccactaaactattccaag 32629231  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 10251129 - 10251039
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaac 104  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| |||||||| ||| | |||  |||||||||||||||||| |||||||    
T  10251129 gagacttttatatttggttcaaattcacacaaatgctcgagattaaacctcaagaccaaagacctaagtgcattctattttaccactaaac 10251039  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 44731288 - 44731189
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||| | |||||| |||| |||||||| |||| ||| | |||  |||||| |||||||||||||| |||| ||| ||||    
T  44731288 gagacttttatatttggttcaaatttacacaaatattcgagattgaacatcaagaccaaagacctaagtgcgttctattttactaccaaacaattacaag 44731189  T

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Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 39608021 - 39607924
Alignment:
Q  15 agacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaa 112  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39608021 agacttttatatttggttcaaattcatacaaatgctcgagattgaacctcaaaaccgatgactcaagtgcattctattttactactaaattattccaa 39607924  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 44614050 - 44613951
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  44614050 gagacttttatatttggttcaaattcacacaaatgctcgggattgaacctcaagaccgatgactcaagtgctttctattttaccactaaactattccaag 44613951  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 38918830 - 38918929
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||| |||||||||||||||||| ||||||| |||  |||||||||||| ||| | ||| ||| |||| |||||||||| ||||||||||| ||||    
T  38918830 gagactttaatatttagttcaaattcacacaaatgctcgacattgaacctcaagaccaaggacccaaatgcactctattttaccactaaactattacaag 38918929  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 39921428 - 39921527
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||    ||||||||| ||||||| ||| ||| ||||||||| ||| |  |||||| ||||||||||||||||||||||||||| ||||    
T  39921428 gagacttttatattcgactcaaattcacacaaatgctcgtgatggaacctcaagaccaaatactcaaatgcattctattttactactaaactattacaag 39921527  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 1112710 - 1112809
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||| ||||||| |||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1112710 gagacttttatatttggttcaaattcacacaaatgctcgaaattgaacctcaagaccgatgactcaagtgcattctattttactactaaactattccaag 1112809  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 1522483 - 1522387
Alignment:
Q  17 acttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||| ||||||||||||||    
T  1522483 acttttatatttggttcaaattcacacaaatgttcgggattgaatctcaagaccgatgactcaagtacattcttttttactaataaactattccaag 1522387  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 31533656 - 31533758
Alignment:
Q  14 gagacttttatatttagttcaaat---tcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattcc 110  Q
    ||||||||||||||| ||||||||   ||| ||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||  ||||||||||| |    
T  31533656 gagacttttatatttggttcaaataattcacacaaatgcttgggattgaacctcaagaccaaggactcaagtgcattctattttatcactaaactatttc 31533755  T
Q  111 aag 113  Q
    |||    
T  31533756 aag 31533758  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 2346272 - 2346354
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttac 96  Q
    |||| ||||||||||  |||||||||| ||||||| ||| ||||||||||||| | | | |||  ||||||||||||||||||    
T  2346272 gagaattttatatttcattcaaattcacacaaatgctcgagattgaacctcaagatcaaagacctaagtgcattctattttac 2346354  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 20397421 - 20397369
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaa 66  Q
    ||||||||||||||| ||||||||||| ||||||| | | |||||||||||||    
T  20397421 gagacttttatatttggttcaaattcacacaaatgcttgagattgaacctcaa 20397369  T

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Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 45231489 - 45231391
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    ||||||||||||||| ||||||||||| | ||||| || || ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  45231489 gagacttttatatttggttcaaattcacataaatgctcagg-ttgaacctcaagaccgatgactcaagtgcattatattttactactaatctattccaag 45231391  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 38153757 - 38153853
Alignment:
Q  17 acttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||| || | | |||||||||| ||| || ||||| ||||||||||| ||||    
T  38153757 acttttatatttggttcaaattcacacaaatgtttgggattgaacctcataatcaaggactcaagtgtattttaatttaccactaaactattacaag 38153853  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 34592270 - 34592322
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaa 66  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  34592270 gagacttttatatttggttcaaattcacacaaatgctcgggattaaacctcaa 34592322  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 38153915 - 38153954
Alignment:
Q  183 aggctcctaagatttcgaggtccggcaccgtagctcacct 222  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  38153915 aggctcctaagattacgaggcccggcaccgtagctcacct 38153954  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 11876609 - 11876519
Alignment:
Q  18 cttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactatt 108  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||| ||| | ||  ||| ||||||||||||||| |||||||||||    
T  11876609 cttttatatttggttcaaattcacccaaatgttcgggattgaacctcaagaccaaagatccaaatgcattctattttaccactaaactatt 11876519  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 15507026 - 15506927
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaactattccaag 113  Q
    |||||||||||||||  |||||||| | ||||||| |||||||||||||||| || | | |||||||||| ||| || ||||| ||||||||||| ||||    
T  15507026 gagacttttatatttgattcaaattaacacaaatgatcgggattgaacctcataatcaaggactcaagtgtattttaatttaccactaaactattacaag 15506927  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 33902912 - 33902822
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctcaaaaccgatgactcaagtgcattctattttactactaaac 104  Q
    ||||||||||||||||||||||||||| || |||  | |||||| ||||| || ||  |  |||||| |||||||||||||||||| ||||    
T  33902912 gagacttttatatttagttcaaattcacactaatacttgggattaaacctaaagactaaaaactcaaatgcattctattttactaccaaac 33902822  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 45284 - 45335
Alignment:
Q  14 gagacttttatatttagttcaaattcatacaaatgttcgggattgaacctca 65  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  45284 gagatttttatatttggttcaaattcacacaaatgctcgggattgaacctca 45335  T

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