View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9376_high_12 (Length: 229)
Name: NF9376_high_12
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 33960842 - 33960939
Alignment:
| Q |
115 |
ctgtcctttaaacaatatatatgtttgtgatagttttttattttaatccaatatttaatga--atccatttgatggccgcaaataatcatgtacccta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33960842 |
ctgtcctttaaacaatatatatgtttgtgatagttttttattctaattcaatatttaatgactatccatttgatggccgcaaataatcatgtacccta |
33960939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 33958824 - 33958878
Alignment:
| Q |
115 |
ctgtcctttaaacaatatatatgtttgtgatagttttttattttaatccaatattt |
170 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
33958824 |
ctgtcctttaaacaatatatatgtccgtgata-atttttattttaattcaatattt |
33958878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University