View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9376_high_7 (Length: 296)

Name: NF9376_high_7
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9376_high_7
NF9376_high_7
[»] chr8 (10 HSPs)
chr8 (17-280)||(2007428-2007691)
chr8 (18-189)||(1969331-1969502)
chr8 (17-187)||(2004141-2004311)
chr8 (17-180)||(2011143-2011306)
chr8 (17-169)||(1965388-1965540)
chr8 (73-163)||(2437180-2437270)
chr8 (25-180)||(2017931-2018086)
chr8 (23-161)||(1963724-1963862)
chr8 (25-96)||(2014632-2014703)
chr8 (94-131)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (23-169)||(5902900-5903046)
chr1 (17-169)||(5906378-5906530)
[»] chr4 (2 HSPs)
chr4 (200-266)||(5890259-5890325)
chr4 (94-165)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 2007691 - 2007428
Alignment:
Q  17 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007691 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 2007592  T
Q  117 tggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttggcgtagaaaaacttaaaaatctaagattcatattcctcgtatatttct 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2007591 tggttcttctacaaaaactatttctcaaatagcacttaagtggagaaatttggtgtagaaaaacttaaaaatctaagattcatattcctcgtatatttct 2007492  T
Q  217 ttgtatggattttccctgaaagagtaatacctttactccaccaagattcaagatcttccttgta 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007491 ttgtatggattttccctgaaagagtaatacctttactccaccaagattcaagatcttccttgta 2007428  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 1969331 - 1969502
Alignment:
Q  18 taaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagat 117  Q
    |||||||||||||  ||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1969331 taaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagat 1969430  T
Q  118 ggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttggcgtagaaaaacttaaaaatc 189  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  1969431 ggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaacttaaaaatc 1969502  T

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Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 2004311 - 2004141
Alignment:
Q  17 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 116  Q
    ||||||||||||||| |||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  2004311 ctaaggtgatcaagtgtctcatggaaggggaagaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaaga 2004212  T
Q  117 tggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttggcgtagaaaaacttaaaaa 187  Q
    ||||||||||||||| || ||||||||| ||||||| |||||||||||||| | |||| ||||| ||||||    
T  2004211 tggttcttctacaaacactatttctcaattagcactcaagtggagaaatttagtgtaggaaaacctaaaaa 2004141  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 2011306 - 2011143
Alignment:
Q  17 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 116  Q
    ||||||||||||||  ||||||||||||||| ||| |||||||||| | |||||| ||||||||||||||||||| |||||| |||||| ||||||||||    
T  2011306 ctaaggtgatcaagcgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaatgcactcaaagaaga 2011207  T
Q  117 tggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttggcgtagaaaaac 180  Q
    ||| ||||||||||| || ||||||||| || |||| |||||||||||||||| | ||||||||    
T  2011206 tggatcttctacaaagactatttctcaattaacactcaagtggagaaatttggtgcagaaaaac 2011143  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 1965388 - 1965540
Alignment:
Q  17 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 116  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||| | |||||| |||||||| ||||||| || |||||| |||||| ||||||||||    
T  1965388 ctaaggtgatcaagtgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaatgcactcaaagaaga 1965487  T
Q  117 tggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttgg 169  Q
    ||| ||||||||||| || || |||||| || |||| ||||||||||||||||    
T  1965488 tggatcttctacaaagactatatctcaattaacactcaagtggagaaatttgg 1965540  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 2437180 - 2437270
Alignment:
Q  73 atgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttcttctacaaaaacgatttctcaaatagcacttaagtggagaa 163  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||||||||| ||||| || ||||||||| || |||| ||||||||||    
T  2437180 atgaaagaactaaaagaagctgcttctaatgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaa 2437270  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 2018086 - 2017931
Alignment:
Q  25 atcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttctt 124  Q
    ||||||| |||||||||||| || || |||| |||| | ||||| || |||||||||||||||||| |||||   | ||||   ||||| ||||| ||||    
T  2018086 atcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaagatgatggatctt 2017987  T
Q  125 ctacaaaaacgatttctcaaatagcacttaagtggagaaatttggcgtagaaaaac 180  Q
     |||||| ||  |||||||| ||||||| ||||||||||||||||  |||||||||    
T  2017986 ttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 2017931  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 1963724 - 1963862
Alignment:
Q  23 tgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttc 122  Q
    ||||||||| |||||||||||| || || |||| |||| | || ||||| ||||||||||| ||||||||||||   | || |   ||||||||||||||    
T  1963724 tgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatggttc 1963823  T
Q  123 ttctacaaaaacgatttctcaaatagcacttaagtggag 161  Q
    | ||||||| ||  |||||||| ||||||| ||||||||    
T  1963824 tactacaaagactctttctcaattagcactcaagtggag 1963862  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 2014703 - 2014632
Alignment:
Q  25 atcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgct 96  Q
    ||||||| |||||||||||| || || |||| |||| | ||||| || |||||||||||||||||| |||||    
T  2014703 atcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgct 2014632  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 23269096 - 23269133
Alignment:
Q  94 gcttcaaatgcagtcaaagaagatggttcttctacaaa 131  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  23269096 gcttctaatgcactcaaagaagatggttcttctacaaa 23269133  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 5902900 - 5903046
Alignment:
Q  23 tgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttc 122  Q
    ||||||||  ||||||||||||||| ||  ||||||| || |||||||| ||||||||||||||||||||| || | |||||  |||||||||| || ||    
T  5902900 tgatcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacgggtc 5902999  T
Q  123 ttctacaaaaacgatttctcaaatagcacttaagtggagaaatttgg 169  Q
    ||||| ||| || ||||||||| ||||||| ||||||||||||||||    
T  5903000 ttctagaaagaccatttctcaattagcactcaagtggagaaatttgg 5903046  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 5906378 - 5906530
Alignment:
Q  17 ctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaaga 116  Q
    ||||||||||||||| |||||||||||| || ||  |||||||||| |||||||| ||||||||||| |||||||| ||| | |||||| |  |||||||    
T  5906378 ctaaggtgatcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaatgcacttcaagaaga 5906477  T
Q  117 tggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaatttgg 169  Q
    ||| ||||||| ||| ||  |||||||| ||||||  ||||||| ||||||||    
T  5906478 tgggtcttctagaaagactgtttctcaattagcacacaagtggaaaaatttgg 5906530  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 5890325 - 5890259
Alignment:
Q  200 attcctcgtatatttctttgtatggattttccctgaaagagtaatacctttactccaccaagattca 266  Q
    |||||| ||| ||||||| ||||| |||  |||||||||||||||||||||||||||||||||||||    
T  5890325 attcctagtagatttcttagtatgaattccccctgaaagagtaatacctttactccaccaagattca 5890259  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 5890674 - 5890603
Alignment:
Q  94 gcttcaaatgcagtcaaagaagatggttcttctacaaaaacgatttctcaaatagcacttaagtggagaaat 165  Q
    ||||| |||||| ||||||||||||||||||||||||| |   |||||||| ||||||| ||||||||||||    
T  5890674 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 5890603  T

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