View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_high_8 (Length: 286)
Name: NF9376_high_8
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 3080900 - 3080640
Alignment:
| Q |
10 |
aaatcaaagcaacaaaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatcaaagacga |
109 |
Q |
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| T |
3080900 |
aaatcaaagcaacaaaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttcaagaggttcaagaccctcaaatcaaagacga |
3080801 |
T |
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| Q |
110 |
tgaagtcctcatcaaagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3080800 |
tgaagtcctcatcaaagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatcca |
3080701 |
T |
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| Q |
210 |
ggtcttgaatgttccggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattg |
270 |
Q |
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| T |
3080700 |
ggtcttgaatgttccggaattattgaattcgttggcaaaaacgtctccaagtggaaaattg |
3080640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 3068008 - 3067762
Alignment:
| Q |
24 |
aaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatcaaagacgatgaagtcctcatca |
123 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||| |
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| T |
3068008 |
aaaatgaaggctattgtaataacaacaccaggtggacctgaagttctacaacttcaagaggttcaagaccctcaacctaaagacaatgaagtactcatca |
3067909 |
T |
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| Q |
124 |
aagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatccaggtcttgaatgttc |
223 |
Q |
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| T |
3067908 |
gagtccatgccactgcccttaacagtgccgacaccgttcagaggaaaggcttttaccctatccctcaaggtgcaagcccctatccaggtcttgaatgttc |
3067809 |
T |
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| Q |
224 |
cggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattg |
270 |
Q |
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| T |
3067808 |
cggaactattgtatgcgttggtataaacgtttccaagtggaaaattg |
3067762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 18011311 - 18011557
Alignment:
| Q |
24 |
aaaatgaaggcaattgtaataacaaaaccaggtgaacctgaagttctacaacttaaagaggttgaagaccctcaaatcaaagacgatgaagtcctcatca |
123 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||| |
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| T |
18011311 |
aaaatgaaggctattgtaataacaacaccaggtggacctgaagttctacaacttcaagaggttcaagaccctcaacctaaagacaatgaagtactcatca |
18011410 |
T |
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| Q |
124 |
aagttcacgccactgcccttaacagagctgatacccttcagaggaaaggcgcttatcctccccctcaaggtgctagcccttatccaggtcttgaatgttc |
223 |
Q |
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||| || ||||||||||||||||| || || ||| |||||||||||||| ||| ||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
18011411 |
gagtccatgccactgcccttaacagtgccgacaccgttcagaggaaaggcttttaccctatccctcaaggtgcaagcccctatccaggtcttgaatgttc |
18011510 |
T |
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| Q |
224 |
cggaatcattgaattcgttggcaaaaacgtctccaagtggaaaattg |
270 |
Q |
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||||| |||| || |||||| | |||||| |||||||||||||||| |
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| T |
18011511 |
cggaactattgtatgcgttggtataaacgtttccaagtggaaaattg |
18011557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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