View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_1 (Length: 657)
Name: NF9376_low_1
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 11 - 642
Target Start/End: Complemental strand, 47838133 - 47837502
Alignment:
| Q |
11 |
acatcataatttatacaacaaagggtgtataatttacaataggaatttgtcatttatcatcttggaacatgaatacttcacctgagctgggactgccttt |
110 |
Q |
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| T |
47838133 |
acatcataatttatacaacaaagggtgtataatttacaataggaatttgtcatttatcatcttggaacatgaatacttcacctgagctgggactgccttt |
47838034 |
T |
|
| Q |
111 |
gccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgacaaaaaacacattccaaatggtga |
210 |
Q |
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| T |
47838033 |
gccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgacaaaaaacacattccaaatggtga |
47837934 |
T |
|
| Q |
211 |
aatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatcatcactggtccaacaccaattaa |
310 |
Q |
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| T |
47837933 |
aatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatcatcactggtccaacaccaattaa |
47837834 |
T |
|
| Q |
311 |
aaataaaaccaaaatcgcacttggcaagtaaccagataccagttgaaccataaatttcctgggnnnnnnntattgttttaacttttcaatgaatttataa |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47837833 |
aaataaaaccaaaatcgcacttggcaagtaaccagataccagttgaaccataaatttcctgggaaaaaaatattgttttaacttttcaatgaatttataa |
47837734 |
T |
|
| Q |
411 |
catttaaaaatttcaaactcctatataatattctacataccatggataaatcataatttacaattaatttatgttacaatgcatctttttctctcttctc |
510 |
Q |
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| T |
47837733 |
catttaaaaatttcaaactcctatataatattctacataccatggataaatcataatttacaattaatttatgttacaatgcatctttttctctcttctc |
47837634 |
T |
|
| Q |
511 |
aaaacaggtttactaaaatgaagttccacggtgtatttttcatgcataatgatgacagtcctgacaaaaaccaacgttgtgaattctctatatttccaaa |
610 |
Q |
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| T |
47837633 |
aaaacaggtttactaaaatgaagttccacggtgtatttatcatgcataatgatgacagtcctgacaaaaaccaacgttgtaaattctctatatttccaaa |
47837534 |
T |
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| Q |
611 |
ttctttcttttgataaactgacatgtaaaggc |
642 |
Q |
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| T |
47837533 |
ttctttcttttgataaactgacatgtaaaggc |
47837502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 89 - 345
Target Start/End: Original strand, 4705571 - 4705827
Alignment:
| Q |
89 |
cacctgagctgggactgcctttgccaattgggcaggtagttctgttatactagtaaacactgatagttgactgataatagacccggtaaaaacattgaca |
188 |
Q |
| |
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|||||||||||| ||||||||||| | | ||||| || ||| ||| |||| ||| ||||| |||||||| |||| ||| || || |||||||| | | |
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| T |
4705571 |
cacctgagctggcactgcctttgcaagtgttgcaggcagctcttttaagctagaaaagactgaaagttgacttataagagaaccagttaaaacattaata |
4705670 |
T |
|
| Q |
189 |
aaaaacacattccaaatggtgaaatacacaactttgcagcatgcacttttcttcttgccgctacgggaaattggcccttcaactgctgaaagtaacatca |
288 |
Q |
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|||||||||||||| || ||||| |||| |||||| || ||||||||||||||| | || || |||||||| || || ||||||| ||||| || ||||| |
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| T |
4705671 |
aaaaacacattccagattgtgaagtacaaaactttccaacatgcacttttcttccttccactgcgggaaataggaccctcaactgttgaaaatagcatca |
4705770 |
T |
|
| Q |
289 |
tcactggtccaacaccaattaaaaataaaaccaaaatcgcacttggcaagtaaccag |
345 |
Q |
| |
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||| |||| |||| | |||||||||||||| ||| ||||||| | |||||||| |
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| T |
4705771 |
tcaatggtggaacaaaacacaaaaataaaaccaatatcacacttggtaggtaaccag |
4705827 |
T |
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