View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_10 (Length: 341)
Name: NF9376_low_10
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 29821890 - 29821701
Alignment:
| Q |
10 |
attattctgacacatttttaccacacttaaaa-ttcatcaacggacgccgaaagnnnnnnngctacatggggaggaggaagaagctttggatatggtgga |
108 |
Q |
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| T |
29821890 |
attattctggcacatttttaccacacttaaaagttcatcaacggacgccgaaagaaaaaaagctacatggggaggaggaagaagctttggatatggtgga |
29821791 |
T |
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| Q |
109 |
gaga--actcaaaatattacttattaatcaatactacacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
196 |
Q |
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| T |
29821790 |
gagataactcaaaatattacttattaatcaatactacacaagtgatagatacagttcatggtgtaccaataacattagtctccagattca |
29821701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 29821610 - 29821516
Alignment:
| Q |
232 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataa |
326 |
Q |
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| T |
29821610 |
cctgattcatctataaacacaataatatggtgcaccatttacacattatcttgtctcaaacactgtcactgttaaaagcagcatacataaaataa |
29821516 |
T |
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