View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9376_low_11 (Length: 334)
Name: NF9376_low_11
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 37565490 - 37565164
Alignment:
| Q |
1 |
agtcgtgtattcttctctctgctatggctggaaatagtctcctatgcatatcagaaggcaattgttgatgagcatctggagaggatgccgatgaaggagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565490 |
agtcgtgtattcttctctctgctatggctggaaatagtctcctatgcatatcagaaggcaattgttgatgagcatctggagaggatgccgatgaaggagc |
37565391 |
T |
|
| Q |
101 |
ctctttcttgcaagaagaataataatccttcaccgctattctattggtcgatacttttatctctttgcacaccttgtccaacattaccaagaaatcgcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565390 |
ctctttcttgcaagaagaataataatccttcaccgctattctattggtcgatacttttatctctttgcacaccttgtccaacattaccaagaaatcgcgt |
37565291 |
T |
|
| Q |
201 |
acaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgcagtgctcttaacctcagtcgtaatcctcttctcttccccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565290 |
acaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgcagtgctcttaacctcagtcgtaatcctcttctcttccccta |
37565191 |
T |
|
| Q |
301 |
tcaaccatttcacttcctcctttgctt |
327 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
37565190 |
tcaaccatttcacttcctcttttgctt |
37565164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 34624635 - 34624732
Alignment:
| Q |
159 |
atctctttgcacaccttgtccaacattaccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatc |
256 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| ||||| || |||||||| | | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
34624635 |
atctctttgcacaccttatccaacattattaagaaatcacgtactattacaaacaatcttaacccttcatctcttcctgcactcccatgaaaataatc |
34624732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 15513469 - 15513358
Alignment:
| Q |
161 |
ctctttgcacaccttgtccaacattaccaagaaatcgcgtacaatcacaaacaaacgcagcccttcatcttttcctgcattcccatgaaaataatctgca |
260 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||| || || |||| || ||||||||||| |||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
15513469 |
ctctttacaaaccttatccaatattatcaagaagtcacgcacaaccaaaaacaaacgcaacccttcatctttccctgcattcccgtgaaaataatccgcc |
15513370 |
T |
|
| Q |
261 |
gtgctcttaacc |
272 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
15513369 |
gtactcttaacc |
15513358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University