View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_16 (Length: 298)
Name: NF9376_low_16
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 26597946 - 26597678
Alignment:
| Q |
20 |
taagcctcacgcgcattgacattgtctatcttgtgcgttaagagtgtttgcaagtacacattatttttatggaacaaccgccatatttaactacttaatt |
119 |
Q |
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| T |
26597946 |
taagcctcacacgcattgacattgtctgtcttgtgcattaagagtgtttgcaagtacacattatttttatggaacaactgccatatttaactacttaatt |
26597847 |
T |
|
| Q |
120 |
gttcctcaggtccttgatgtaggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgt |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26597846 |
gttcctcaggtccttgatctaggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgt |
26597747 |
T |
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| Q |
220 |
aattacattgatgtaattttataaaccaaatatgggtggttaatcttcttctacccttcgaattctctg |
288 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
26597746 |
aattacattgatataattttataaaccaaatatgggtagttaatcttcttctacccttcgaatcctctg |
26597678 |
T |
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