View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_2 (Length: 558)
Name: NF9376_low_2
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 27722116 - 27722471
Alignment:
| Q |
15 |
aaaaaacatagtttaaggttttatattatgtgggtttgagatgtaacaaacaactcaactataaatggcacgtgacttccacggcgatgacacgtgactt |
114 |
Q |
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| T |
27722116 |
aaaaaacatagtttaaggttttatattatgtgggtttgagatgtaacaaacaactcaactataaatggcacgtgacttccacggcgatgacacgcgactt |
27722215 |
T |
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| Q |
115 |
atattatgaagaatacgattctttttct---ctactttgattcaacgcaaataagaagacagaaacaataatcgaatactatgtatgtgttttatttcta |
211 |
Q |
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| T |
27722216 |
atattatgaagaatacgattctttttctctactactttgattcaacgcaaataagaagacagaaacaataatcgaatactatgtatgtgttttatttcta |
27722315 |
T |
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| Q |
212 |
taaataagaaaatctgaatctaatgat-----ggaagctaatnnnnnnntctaataatgtttttaaccaccaaagcctgtttgttggtcacatgaaagag |
306 |
Q |
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| T |
27722316 |
taaataagaaaatctgaatctaatgatggaagggaagctaataaaaaaatctaataatatgtttaaccaccaaagcctgtttgttggtcacatgaaagag |
27722415 |
T |
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| Q |
307 |
actggtagttacaaaacacgccaaagtaacagcttgtccgacacatatgcgagtgc |
362 |
Q |
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| T |
27722416 |
actggtagttacaaaacacgccaaagtaacagcttgtccgacacatatgcgagtgc |
27722471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 27722520 - 27722575
Alignment:
| Q |
412 |
ctcgtggtttctagttattaaaaattaaaatcctattcatctaaaactctaccacc |
467 |
Q |
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| T |
27722520 |
ctcgtggtttctagttattaaaaattaaaatcctattcatctaaaactctaccacc |
27722575 |
T |
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