View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_26 (Length: 247)
Name: NF9376_low_26
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 37028705 - 37028934
Alignment:
| Q |
18 |
aagacccctgtgtcataaatacacaatggtttggcattcacaagctcaannnnnnnnaaggatgttgctaaccgatgcaattagggcattgttaagaatt |
117 |
Q |
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| T |
37028705 |
aagacccctgtgtcataaatacacaatggttcggcattcacaagctcaattttttttaaggatgttgctaaccgatgcaatcagggcattgttaagaatt |
37028804 |
T |
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| Q |
118 |
ttacaaatataaattttgtcttggaaatataaaattcatatatataccaatagaccgaacctatgagaaaccaatatcaaattcatatatagaccaatga |
217 |
Q |
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| T |
37028805 |
ttacaaataaaaattttgtcttggaaatataaaattcatatatataccaatagaccgaacctatgagaaaccaatatcaaattcatatatagaccaatga |
37028904 |
T |
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| Q |
218 |
taggagcacaagaaaattgagatggaagaa |
247 |
Q |
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| T |
37028905 |
taggagcacaagaaaattgagatggaagaa |
37028934 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 32909405 - 32909446
Alignment:
| Q |
108 |
gttaagaattttacaaatataaattttgtcttggaaatataa |
149 |
Q |
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| T |
32909405 |
gttaagaaatatacaaatataaattttgtcttggaaatataa |
32909446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 40574154 - 40574187
Alignment:
| Q |
119 |
tacaaatataaattttgtcttggaaatataaaat |
152 |
Q |
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| T |
40574154 |
tacaaatagaaattttgtcttggaaatataaaat |
40574187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 2768561 - 2768605
Alignment:
| Q |
108 |
gttaagaattttacaaatataaattttgtcttggaaatataaaat |
152 |
Q |
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| T |
2768561 |
gttaaggattctacaaataaaaattttgtcttggaaatataaaat |
2768605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 41726998 - 41726965
Alignment:
| Q |
119 |
tacaaatataaattttgtcttggaaatataaaat |
152 |
Q |
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| T |
41726998 |
tacaaataaaaattttgtcttggaaatataaaat |
41726965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 26829605 - 26829564
Alignment:
| Q |
108 |
gttaagaattttacaaatataaattttgtcttggaaatataa |
149 |
Q |
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| T |
26829605 |
gttaagaaatttacaattagaaattttgtcttggaaatataa |
26829564 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 34145906 - 34145946
Alignment:
| Q |
109 |
ttaagaattttacaaatataaattttgtcttggaaatataa |
149 |
Q |
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| T |
34145906 |
ttaagaaatttactaatataaattttgtgttggaaatataa |
34145946 |
T |
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