View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_27 (Length: 240)
Name: NF9376_low_27
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_27 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 2678499 - 2678275
Alignment:
| Q |
16 |
caagaacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcacactgcttaatt |
115 |
Q |
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| T |
2678499 |
caagaacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcacactgcttaatt |
2678400 |
T |
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| Q |
116 |
tctgaaacctgtcggcttctgtgcagttcaaaggtgttttcctgatacacccaccggagcgattaaacgaattccattcgtcttgtgatcgaggtttgaa |
215 |
Q |
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| T |
2678399 |
tctgaaacctgtcggcttctgtgcagttcaaaggtgttttcctgatacacccaccggagcgattaaacgaattccattcgtcttgtgatcgtggtttgaa |
2678300 |
T |
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| Q |
216 |
gcctttcaaacaatcacaataaaca |
240 |
Q |
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| T |
2678299 |
gcctttcaaacaatcacaataaaca |
2678275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 38701498 - 38701401
Alignment:
| Q |
46 |
cattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcacactgcttaatttctgaaacctgtcggcttctgtgcagtt |
143 |
Q |
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| T |
38701498 |
cattctttaagactcatgctactatttgtctagaactgcaacaacatagacaattttacattggttaatttctgaaacctgccagcttgtgtgcagtt |
38701401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 3052264 - 3052332
Alignment:
| Q |
172 |
gagcgattaaacgaattccattcgtcttgtgatcgaggtttgaagcctttcaaacaatcacaataaaca |
240 |
Q |
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| T |
3052264 |
gagcgattaaacaaatcctatccgtcttgtgatcgaggtttgaagcctttcaaacaatcacaataaaca |
3052332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 34227904 - 34227778
Alignment:
| Q |
20 |
aacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcacactgcttaatttctg |
119 |
Q |
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| T |
34227904 |
aacaatccttcaagcactccacctcacattcttcaagtctcatgctactatttgtccagaactgcaacagcattggcgatttcactgtggttaatttctg |
34227805 |
T |
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| Q |
120 |
aaacctgtcggcttctgtgcagttcaa |
146 |
Q |
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| T |
34227804 |
aaacctgtcagcttgtgtgcagttcaa |
34227778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 19474309 - 19474397
Alignment:
| Q |
16 |
caagaacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcac |
104 |
Q |
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| T |
19474309 |
caagaacaatccttcaagcaatccacctcacattcttcaaagctcatgctacgaaatgtccagcaatgcagcaacatagaaaatttcac |
19474397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 19545234 - 19545322
Alignment:
| Q |
16 |
caagaacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcac |
104 |
Q |
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| T |
19545234 |
caagaacaatccttcaagcaatccacctcacattcttcaaagctcatgctacgaaatgtccagcaatgcagcaacatagaaaatttcac |
19545322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 19587463 - 19587375
Alignment:
| Q |
16 |
caagaacaatccttcaagcactccaccttgcattcttcaagactcatgctgctatttgtccagaactgcaacaacataggcaatttcac |
104 |
Q |
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| T |
19587463 |
caagaacaatccttcaagcaatccacctcacattcttcaaagctcatgctacgaaatgtccagcaatgcagcaacatagaaaatttcac |
19587375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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