View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9376_low_29 (Length: 239)
Name: NF9376_low_29
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_29 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 50824503 - 50824725
Alignment:
| Q |
17 |
tctaatagggtttgaattgattgtataagagtcgatgtggcattgaatttggagcattaagtatacgaaacgagtttgtgtcttcatgcggcaagttact |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50824503 |
tctaatagggtttgaattgattggataagagtcgatgtggcattgaatttggagcattaagtatacgaaacgagtttgtgtcttcatgcggcaagttact |
50824602 |
T |
|
| Q |
117 |
catggaaggttgctaacaaattccataatggccaaatggaacttcagccaatcgaattgtgtgcatcatggtcagtttgaagaaacaattttgcatgtcc |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50824603 |
catggaaggttactaacaaattccataatggccaaatggaacttcagccaatcgaatcgtgtgcatcatggtcagtttgaagaaacaattttgcatgtcc |
50824702 |
T |
|
| Q |
217 |
ttggagattgtccattggcctcc |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
50824703 |
ttggagattgtccattggcctcc |
50824725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University