View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_3 (Length: 406)
Name: NF9376_low_3
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_3 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 27232462 - 27232066
Alignment:
| Q |
10 |
cgtgttcaaacgccgttccatgtagacaagtaaacatggttgcaannnnnnncggacccgcgagaattcttgcaggatgatgttgatgatgtgggacatg |
109 |
Q |
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| T |
27232462 |
cgtgttcaaacgccgttccatgtagacaagtaaacatggttgcaatttttttcggacccgcaagaattcttgcaggatgatgttgatgatgtgggacatg |
27232363 |
T |
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| Q |
110 |
tggaccataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagtt |
209 |
Q |
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| T |
27232362 |
tggaccataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagtt |
27232263 |
T |
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| Q |
210 |
ctagcaagcattacaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttagctcccggtgcataattcaaaacaacatacttatcgt |
309 |
Q |
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| T |
27232262 |
ctagcaagcattgcaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttcgctcccggtgcataattcaaaaccacatacttatcat |
27232163 |
T |
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| Q |
310 |
cgacgaaaacgtaacattcattatgcttgaatgaacgaaatgcagcaccaatatgagtaagtgtcatctttcttgttagaggatttatttgtgtatc |
406 |
Q |
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| T |
27232162 |
caacaaaaacgtaacattcattatgcttgaatgaacgaaatgcagcacctatacgagtaagtgtcatctttcttgttggaggatttatttgtgtatc |
27232066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 26819149 - 26819543
Alignment:
| Q |
12 |
tgttcaaacgccgttccatgtagacaagtaaacatggttgcaannnnnnncggacccgcgagaattcttgcaggatgatgttgatgatgtgggacatgtg |
111 |
Q |
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| T |
26819149 |
tgttcaaacaccgttccatgtagacaagtaaacatggttgcaatttttttcggacacgagagtattctggcaggatgatgttgatgatgtgggacaattg |
26819248 |
T |
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| Q |
112 |
gaccataggttattagggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttct |
211 |
Q |
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| T |
26819249 |
gaccataggttataagggcacaatgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaatggagttct |
26819348 |
T |
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| Q |
212 |
agcaagcattacaaaaccagctacaatatgaagtggccccttcaaaatctcatgcttcttagctcccggtgcataattcaaaacaacatacttatcgtcg |
311 |
Q |
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| T |
26819349 |
ggcaagcattgcaaaaccagctacaatgtgaagtggccctttcaaaatctcatgcttcttggctcctggtgcataattcaaaaccacatacttatcatca |
26819448 |
T |
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| Q |
312 |
acgaaaacgtaacattcattatgcttgaatgaacgaaatgcagcaccaatatgagtaagtgtcatctttcttgttagaggatttatttgtgtatc |
406 |
Q |
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| T |
26819449 |
acgaaaacgtaacattcattgtgcttgaatgaacgaaatgcagaacctatacgagtaagtgtcatctttcttgttggaggatttatctgtgtatc |
26819543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 17771529 - 17771604
Alignment:
| Q |
128 |
ggcacagtgatttccagaaaagatgaatgcctcattgtgttgggtctcaaaggcacaatctattccatgttcaaat |
203 |
Q |
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| T |
17771529 |
ggcacattgattcccagagaagatgaatgccttgttgtgtttgatgtccaaggcacaatcgattccattttcaaat |
17771604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 3686 - 3640
Alignment:
| Q |
312 |
acgaaaacgtaacattcattatgcttgaatgaacgaaatgcagcacc |
358 |
Q |
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| T |
3686 |
acgaaaaggtaacattcattaggcttggatgaacggaatgcagcacc |
3640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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