View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_31 (Length: 239)
Name: NF9376_low_31
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 4841553 - 4841764
Alignment:
| Q |
16 |
aaaagccacagcacaaaccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaacaattacttagttg |
115 |
Q |
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| T |
4841553 |
aaaaggcacaacacaaaccacctaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaacaattgcttagttg |
4841648 |
T |
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| Q |
116 |
atattggtatgccttgtcgcattgatgtttcagaa------aggtggaggggaatgttgtattatatgtggtaatacaggtggtaatccatgtggtaaac |
209 |
Q |
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| T |
4841649 |
atattggtatgccttgtcgcattgatgtttcagaaatgtctaggtggaggggaatgttgtcttatatgtggtaatacaggtggtaatccatgtggtaaac |
4841748 |
T |
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| Q |
210 |
cccttacgaatggagt |
225 |
Q |
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| T |
4841749 |
cccttacgaatggagt |
4841764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 4834835 - 4834972
Alignment:
| Q |
16 |
aaaagccacagcacaaa-ccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaa-----aacaattact |
109 |
Q |
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| T |
4834835 |
aaaagccacaacacaaaaccacccaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaagcaaattaaaaacaattact |
4834930 |
T |
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| Q |
110 |
tagttgatattggtatgccttgtcgcattgatgtttcagaaa |
151 |
Q |
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| T |
4834931 |
tagttgatatttgtatgccttgtcgcgttgatgtttcagaaa |
4834972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 4871176 - 4871241
Alignment:
| Q |
30 |
aaaccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaa |
99 |
Q |
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| T |
4871176 |
aaaccacccaaacaacccttaata----caatataatcacagcagaaaaaccttaaccaaatcaagcaaa |
4871241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 4826193 - 4826246
Alignment:
| Q |
98 |
aaaacaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
151 |
Q |
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|||||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |
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| T |
4826193 |
aaaacaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4826246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 4845601 - 4845651
Alignment:
| Q |
101 |
acaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
151 |
Q |
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| T |
4845601 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4845651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 4871360 - 4871410
Alignment:
| Q |
101 |
acaattacttagttgatattggtatgccttgtcgcattgatgtttcagaaa |
151 |
Q |
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||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |
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| T |
4871360 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaa |
4871410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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