View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9376_low_32 (Length: 236)

Name: NF9376_low_32
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9376_low_32
NF9376_low_32
[»] chr8 (15 HSPs)
chr8 (1-214)||(16658788-16659001)
chr8 (5-214)||(1668073-1668282)
chr8 (1-214)||(38521164-38521374)
chr8 (1-157)||(22014860-22015016)
chr8 (70-214)||(6786405-6786550)
chr8 (63-192)||(22432291-22432424)
chr8 (63-192)||(29182575-29182708)
chr8 (63-192)||(27576749-27576888)
chr8 (48-192)||(43916091-43916235)
chr8 (63-192)||(774680-774814)
chr8 (51-177)||(11472344-11472476)
chr8 (65-162)||(42808687-42808784)
chr8 (70-162)||(33360397-33360489)
chr8 (63-118)||(780362-780417)
chr8 (126-185)||(34212961-34213020)
[»] chr4 (16 HSPs)
chr4 (1-214)||(23218158-23218371)
chr4 (18-214)||(13740207-13740403)
chr4 (8-205)||(21355844-21356041)
chr4 (57-210)||(45143944-45144097)
chr4 (57-210)||(45152713-45152866)
chr4 (63-192)||(21604412-21604545)
chr4 (63-192)||(46164366-46164499)
chr4 (63-192)||(47825894-47826027)
chr4 (61-170)||(54785186-54785295)
chr4 (63-192)||(8432980-8433113)
chr4 (44-205)||(33753942-33754105)
chr4 (48-177)||(38115443-38115578)
chr4 (1-50)||(45144082-45144131)
chr4 (1-50)||(45152851-45152900)
chr4 (65-162)||(14799999-14800096)
chr4 (57-123)||(3187580-3187646)
[»] chr2 (7 HSPs)
chr2 (1-214)||(3935310-3935523)
chr2 (72-214)||(38978382-38978524)
chr2 (63-192)||(25697567-25697700)
chr2 (48-122)||(32339602-32339678)
chr2 (138-179)||(8485531-8485572)
chr2 (133-185)||(20917027-20917079)
chr2 (1-40)||(38978344-38978383)
[»] chr3 (9 HSPs)
chr3 (1-214)||(2338754-2338965)
chr3 (57-214)||(52893399-52893556)
chr3 (57-211)||(21239406-21239560)
chr3 (63-192)||(9456400-9456533)
chr3 (67-162)||(40922976-40923071)
chr3 (1-50)||(52893541-52893590)
chr3 (67-162)||(2733793-2733888)
chr3 (13-50)||(21239545-21239582)
chr3 (126-185)||(4329855-4329916)
[»] chr5 (10 HSPs)
chr5 (1-192)||(3174150-3174345)
chr5 (63-192)||(32863634-32863763)
chr5 (63-192)||(10572689-10572822)
chr5 (48-192)||(19209097-19209241)
chr5 (48-192)||(23737872-23738016)
chr5 (48-168)||(43300188-43300308)
chr5 (58-183)||(41958594-41958717)
chr5 (67-162)||(22273148-22273243)
chr5 (58-113)||(18739398-18739453)
chr5 (138-213)||(18739449-18739531)
[»] scaffold0393 (1 HSPs)
scaffold0393 (37-214)||(11143-11317)
[»] scaffold1160 (1 HSPs)
scaffold1160 (56-214)||(2435-2587)
[»] chr7 (7 HSPs)
chr7 (63-192)||(6472244-6472377)
chr7 (63-192)||(9371793-9371926)
chr7 (63-192)||(21358022-21358155)
chr7 (67-192)||(35012978-35013107)
chr7 (48-183)||(44660309-44660443)
chr7 (75-162)||(31419280-31419367)
chr7 (126-185)||(12003038-12003099)
[»] chr1 (10 HSPs)
chr1 (63-192)||(29599251-29599384)
chr1 (63-192)||(324665-324798)
chr1 (48-185)||(17480972-17481109)
chr1 (63-192)||(48184225-48184352)
chr1 (63-186)||(26354997-26355125)
chr1 (48-157)||(6165022-6165133)
chr1 (51-157)||(16764513-16764621)
chr1 (53-155)||(10801546-10801650)
chr1 (63-145)||(26014504-26014586)
chr1 (48-87)||(20727516-20727554)
[»] chr6 (5 HSPs)
chr6 (63-192)||(32397218-32397352)
chr6 (91-192)||(9302995-9303095)
chr6 (67-162)||(7171047-7171142)
chr6 (126-185)||(14654645-14654704)
chr6 (126-185)||(32397747-32397808)
[»] scaffold0285 (1 HSPs)
scaffold0285 (51-157)||(8359-8467)
[»] scaffold0054 (1 HSPs)
scaffold0054 (51-157)||(2888-2996)
[»] scaffold1084 (1 HSPs)
scaffold1084 (48-177)||(1208-1340)
[»] scaffold1300 (2 HSPs)
scaffold1300 (48-199)||(908-1067)
scaffold1300 (48-81)||(769-802)
[»] scaffold0005 (1 HSPs)
scaffold0005 (65-162)||(39631-39728)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16659001 - 16658788
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659001 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 16658902  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658901 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 16658802  T
Q  201 gtaatcgcggcggc 214  Q
    ||||||||||||||    
T  16658801 gtaatcgcggcggc 16658788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 1668282 - 1668073
Alignment:
Q  5 acagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668282 acagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaag 1668183  T
Q  105 aaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaa 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668182 gaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaa 1668083  T
Q  205 tcgcggcggc 214  Q
    ||||||||||    
T  1668082 tcgcggcggc 1668073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38521164 - 38521374
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38521164 aacaacagtcaacaggtttaacaattagagttgaaaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 38521263  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||    
T  38521264 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagataactctctaaact---gaaggaggaga 38521360  T
Q  201 gtaatcgcggcggc 214  Q
    ||||||||||||||    
T  38521361 gtaatcgcggcggc 38521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 22015016 - 22014860
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||    
T  22015016 aacaacagtcaacaggtttaacaattagagttaacaatcaactaaagaactcatggaaatcaactaaagaatatgtaatcatcaaacaataatcataatt 22014917  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 157  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22014916 gaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 22014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 6786550 - 6786405
Alignment:
Q  70 aacatgtaatcatcaaatcataatcataattgaagaaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggagagagatg 168  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6786550 aacatgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggagagagatg 6786451  T
Q  169 gagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  6786450 gagatagctttcaaaactgaagaaggaggagagtaatcgcggcggc 6786405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 22432291 - 22432424
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432291 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 22432390  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  22432391 gagatggatggagatagctctctaaactaaagaa 22432424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 29182575 - 29182708
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182575 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29182674  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  29182675 gagatggatggagatagctctctaaactaaagaa 29182708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 27576888 - 27576749
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataat------tgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 156  Q
    ||||||||||||||||||||||||||| ||||| |||      ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576888 actaaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 27576789  T
Q  157 tggagagaga----tggagatagctctctaaactgaagaa 192  Q
    ||||||||||    |||||||||||||||||||| |||||    
T  27576788 tggagagagatggatggagatagctctctaaactaaagaa 27576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 43916235 - 43916091
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||||||||||||||||| |||||| |||| | |||  | ||||| | |||||| |||||||||| || |||||||| |||||||| ||||||||||    
T  43916235 aactcatggcaatcaactaaataacatgcaatcgttaaagaagaatcagatttgaaggaaattacattaaaattcacatttccttacaatttacaacaat 43916136  T
Q  148 tagggtttgtggagagagatggagatagctctctaaactgaagaa 192  Q
     ||||||| ||||||||||||||||||||||||||||||||||||    
T  43916135 cagggtttatggagagagatggagatagctctctaaactgaagaa 43916091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 774680 - 774814
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 161  Q
    ||||||||||||||||| |||| |||| ||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  774680 actaaagaacatgtaattatcatatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 774779  T
Q  162 a--ga--gatggagatagctctctaaactgaagaa 192  Q
    |  ||  |||||||||||||||||||||| |||||    
T  774780 aaggatggatggagatagctctctaaactaaagaa 774814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 11472344 - 11472476
Alignment:
Q  51 tcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt----gaagaaaattacattcaatttcacattaccttacaagttacaacaa 146  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||||||    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  11472344 tcatggcaatcaa-taaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaa 11472442  T
Q  147 ttagggtt---tgtggagagagatggagatagct 177  Q
    ||||||||   |||||||||||||| ||||||||    
T  11472443 ttagggttttctgtggagagagatgaagatagct 11472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 42808784 - 42808687
Alignment:
Q  65 taaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||||||||||| |  ||||||||| |||||| ||| |||||||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  42808784 taaagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggaga 42808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 33360489 - 33360397
Alignment:
Q  70 aacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||| |  ||||||||| |||||| ||| |||||||||||||| |||| ||| ||| |||| | ||||||||||||||||||    
T  33360489 aacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaacttgcaatttaccagaattagggtttgtggaga 33360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 780362 - 780417
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaa 118  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  780362 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 34212961 - 34213020
Alignment:
Q  126 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 185  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  34212961 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 34213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23218158 - 23218371
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218158 aacaacagtcaacaggtttaacaattagagttgaaaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 23218257  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23218258 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagataactctctaaactgaagaaggaggaga 23218357  T
Q  201 gtaatcgcggcggc 214  Q
    ||||||||||||||    
T  23218358 gtaatcgcggcggc 23218371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 13740207 - 13740403
Alignment:
Q  18 ttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattca 117  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13740207 ttaacaattagagttgaaaatcaactaaagaactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattca 13740306  T
Q  118 atttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13740307 atttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 13740403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 21356041 - 21355844
Alignment:
Q  8 gtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||    
T  21356041 gtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggaaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaa 21355942  T
Q  108 attacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaat 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355941 attacattcaatttcacgttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaat 21355844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 45144097 - 45143944
Alignment:
Q  57 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144097 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 45143998  T
Q  157 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcgg 210  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  45143997 tggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcgg 45143944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 45152866 - 45152713
Alignment:
Q  57 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152866 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 45152767  T
Q  157 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcgg 210  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  45152766 tggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcgg 45152713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 21604545 - 21604412
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604545 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21604446  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  21604445 gagatggatggagatagctctctaaactaaagaa 21604412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 46164366 - 46164499
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164366 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 46164465  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  46164466 gagatggatggagatagctctctaaactaaagaa 46164499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 47826027 - 47825894
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826027 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 47825928  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  47825927 gagatggatggagatagctctctaaactaaagaa 47825894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 54785186 - 54785295
Alignment:
Q  61 caactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 160  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54785186 caacttaagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 54785285  T
Q  161 gagagatgga 170  Q
    ||||||||||    
T  54785286 gagagatgga 54785295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 8432980 - 8433113
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8432980 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 8433079  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    ||||||||||||| |||||||| |||||    
T  8433080 gagatggatggagatagctttctaaactaaagaa 8433113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 33753942 - 33754105
Alignment:
Q  44 aaagaactcatggcaatcaactaaagaac--atgtaatcatcaaatcataatcataattgaagaaaattacattca--atttcacatt-accttacaagt 138  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||  ||||||  || || ||||   |    
T  33753942 aaagagctcatggcaatcaactaaagaactcatgtaatcatcaaatcaaaatcataattgaagaaaattacattcaatatttcaatttcacattac---t 33754038  T
Q  139 tacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaat 205  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||    
T  33754039 tacaacaattagggtttgtggaaagagatggagataactctcaaaactgaagaaggatgagagtaat 33754105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 38115578 - 38115443
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt----gaagaaaattacattcaatttcacattaccttacaagttacaa 143  Q
    |||||||||||||||| |||| ||||||||||||||| |||| ||||||||||    |||| ||||||||||||||||||||||||||||||| ||||||    
T  38115578 aactcatggcaatcaa-taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaa 38115480  T
Q  144 caattagggt---ttgtggagagagatggagatagct 177  Q
    ||||||||||   ||||||||||||||| ||||||||    
T  38115479 caattagggtttgttgtggagagagatgaagatagct 38115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45144131 - 45144082
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144131 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 45144082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45152900 - 45152851
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152900 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 45152851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 14799999 - 14800096
Alignment:
Q  65 taaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||| |||||||||| |  ||||||||| |||||| ||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  14799999 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 14800096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 3187580 - 3187646
Alignment:
Q  57 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttca 123  Q
    ||||||| ||||||||||||||||||||||  | ||||| | || ||| ||| ||||||||||||||    
T  3187580 caatcaattaaagaacatgtaatcatcaaagaagaatcagatttaaaggaaaatacattcaatttca 3187646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3935310 - 3935523
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3935310 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaattataatcataatt 3935409  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3935410 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaagtaggaga 3935509  T
Q  201 gtaatcgcggcggc 214  Q
    ||||||||||||||    
T  3935510 gtaatcgcggcggc 3935523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 38978382 - 38978524
Alignment:
Q  72 catgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggag 171  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggagagagatggag 38978481  T
Q  172 atagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  38978482 atagctttctaaactgaagaaggaggagagtaattgcggcggc 38978524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 25697567 - 25697700
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25697567 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 25697666  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  25697667 gagatggatggagatagctctctaaactaaagaa 25697700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 32339678 - 32339602
Alignment:
Q  48 aactcatggcaatcaactaaagaac--atgtaatcatcaaatcataatcataattgaagaaaattacattcaatttc 122  Q
    |||| |||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32339678 aacttatggaaatcaactaaagaactcatgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 8485531 - 8485572
Alignment:
Q  138 ttacaacaattagggtttgtggagagagatggagatagctct 179  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  8485531 ttacaagaattagggtttgtggagagagatagagatagctct 8485572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 20917079 - 20917027
Alignment:
Q  133 acaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 185  Q
    |||| |||||| || || ||||||||||||||||||||||||||||| |||||    
T  20917079 acaatttacaagaactaaggtttgtggagagagatggagatagctctttaaac 20917027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38978344 - 38978383
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatca 40  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  38978344 aacaacactcaacatgtttaacaattagagttgacaatca 38978383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2338754 - 2338965
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  2338754 aacaacagtcaacaggtttaacaattagagttgaaaatcaactaaagaactcatggcaatcaaataaagaacatgtaata--caaatcataatcataatt 2338851  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggaga 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2338852 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagataactctctaaactgaagaaggaggaga 2338951  T
Q  201 gtaatcgcggcggc 214  Q
    ||||||||||||||    
T  2338952 gtaatcgcggcggc 2338965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 57 - 214
Target Start/End: Complemental strand, 52893556 - 52893399
Alignment:
Q  57 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893556 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 52893457  T
Q  157 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52893456 tggagagagatggagatagctttctaaactgaagaaggaggagagtaatcgcggcggc 52893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 21239560 - 21239406
Alignment:
Q  57 caatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 156  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239560 caatcaactaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 21239461  T
Q  157 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggc 211  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||    
T  21239460 tggagagagacggagatagctttctaaactgaagaagaaggagagtgatcgcggc 21239406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 9456533 - 9456400
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9456533 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggaga 9456434  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    ||||||||||| |||||||| |||||    
T  9456433 gagatggatggagatagctgtctaaactaaagaa 9456400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 40923071 - 40922976
Alignment:
Q  67 aagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||||||||| |  ||||||||| |||||| ||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  40923071 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 40922976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52893590 - 52893541
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893590 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaac 52893541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 2733888 - 2733793
Alignment:
Q  67 aagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||||||||| |  ||||||||| |||||| ||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  2733888 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 2733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 21239582 - 21239545
Alignment:
Q  13 caggtttaacaattagagttgacaatcaactaaagaac 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21239582 caggtttaacaattagagttgacaatcaactaaagaac 21239545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 4329855 - 4329916
Alignment:
Q  126 ttaccttacaagttacaacaattagggtttgtg--gagagagatggagatagctctctaaac 185  Q
    ||||||||||| |||| | || |||||||||||  ||||||||||||||||||||| |||||    
T  4329855 ttaccttacaatttactagaactagggtttgtggagagagagatggagatagctctttaaac 4329916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 3174345 - 3174150
Alignment:
Q  1 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3174345 aacaacagtcaacaggtttaacaattagagttgacaatcaactaaagaactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataatt 3174246  T
Q  101 gaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagaga----tggagatagctctctaaactgaagaa 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| |||||    
T  3174245 gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggatggagatagctctctaaactaaagaa 3174150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 32863763 - 32863634
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863763 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 32863664  T
Q  163 gagatggagatagctctctaaactgaagaa 192  Q
      |||||||||||||||||||||| |||||    
T  32863663 tggatggagatagctctctaaactaaagaa 32863634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 10572822 - 10572689
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572822 actaaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 10572723  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  10572722 gagatggatggagatagctctctaaactaaagaa 10572689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 19209097 - 19209241
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||||||||||||||||||||||||||||||| ||| || ||||| | |||||| ||||||||||||||||||| ||||||||| | ||||||||||    
T  19209097 aactcatggcaatcaactaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaat 19209196  T
Q  148 tagggtttgtggagagagatggagatagctctctaaactgaagaa 192  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  19209197 tagggtttatggagagagatgcagatagctctttaaactgaagaa 19209241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 23738016 - 23737872
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||||||||||||||||||||||||||||||| |||  | ||||| | |||||| ||||||||||||||||||  ||||||||||| ||||||||||    
T  23738016 aactcatggcaatcaactaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaat 23737917  T
Q  148 tagggtttgtggagagagatggagatagctctctaaactgaagaa 192  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  23737916 tagggtttatggagagagatgcagatagctctttaaactgaagaa 23737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 43300308 - 43300188
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||| | ||||||| ||||||||||||||||| |||  | ||||| |||||||  |||||||||||||||||||||||||||| || ||||||||||    
T  43300308 aactcattgaaatcaacaaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaat 43300209  T
Q  148 tagggtttgtggagagagatg 168  Q
    |||||||| ||||||||||||    
T  43300208 tagggtttatggagagagatg 43300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 41958594 - 41958717
Alignment:
Q  58 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 157  Q
    ||||||||||| ||||||||||||| |||  | ||||| |||||||  |||||||||||||||||||||||||||  || | |||||||||||||||| |    
T  41958594 aatcaactaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggtttat 41958692  T
Q  158 ggagagagatggagatagctctctaa 183  Q
    |||||||||| |||||| ||||||||    
T  41958693 ggagagagat-gagataactctctaa 41958717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 22273148 - 22273243
Alignment:
Q  67 aagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||||||||| |  ||||||||| |||||| ||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  22273148 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 22273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 18739398 - 18739453
Alignment:
Q  58 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattaca 113  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  18739398 aatcaactaaataacatgtaatcatcaaatcagaatcataattgaaggaaattaca 18739453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 18739449 - 18739531
Alignment:
Q  138 ttacaacaattagggtttgtggagagagatggag----atagctctctaaact---gaagaaggaggagagtaatcgcggcgg 213  Q
    |||||| |||||||||||||||||||||||| ||    | ||||||||||| |   ||||||| |||||||||||||||||||    
T  18739449 ttacaataattagggtttgtggagagagatgaaggaagaaagctctctaaattgaagaagaagaaggagagtaatcgcggcgg 18739531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 11143 - 11317
Alignment:
Q  37 atcaactaaagaactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaa 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11143 atcaactaaagaactcatggaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaa 11242  T
Q  137 gttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  11243 gttacaacaattaggatttgtggagagagatggagatagctctctaaact---gaaggaggagagtaatcgcggcggc 11317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 2587 - 2435
Alignment:
Q  56 gcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggttt 155  Q
    ||||||||||||||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2587 gcaatcaactaaagaacatgtaatcatcaaatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 2494  T
Q  156 gtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2493 gtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggc 2435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 6472244 - 6472377
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472244 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 6472343  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  6472344 gagatggatggagatagctctctaaactaaagaa 6472377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 9371926 - 9371793
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371926 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 9371827  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  9371826 gagatggatggagatagctctctaaactaaagaa 9371793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 21358022 - 21358155
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358022 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21358121  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  21358122 gagatggatggagatagctctctaaactaaagaa 21358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 35012978 - 35013107
Alignment:
Q  67 aagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagaga-- 164  Q
    ||||||||||||| ||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35012978 aagaacatgtaattatcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagaga 35013077  T
Q  165 --gatggagatagctctctaaactgaagaa 192  Q
      |||||||||||||||||||||| |||||    
T  35013078 tggatggagatagctctctaaactaaagaa 35013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 44660443 - 44660309
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||| | ||||||||||||||||||||||||| |||  | ||||| |||||||  |||||||||||||||||||||||||||| || ||| ||||||    
T  44660443 aactcattgaaatcaactaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaat 44660344  T
Q  148 tagggtttgtggagagagatggagatagctctctaa 183  Q
    |||||||| ||||||||||| |||||| ||||||||    
T  44660343 tagggtttatggagagagat-gagataactctctaa 44660309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 31419367 - 31419280
Alignment:
Q  75 gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||| |  ||||||||| |||||| ||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  31419367 gtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 31419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 12003038 - 12003099
Alignment:
Q  126 ttaccttacaagttacaacaattagggtttgtgg--agagagatggagatagctctctaaac 185  Q
    ||||||||||| |||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  12003038 ttaccttacaatttacaagaattagggtgtgtggaaagagagatggagatagctctttaaac 12003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 29599251 - 29599384
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599251 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29599350  T
Q  163 ga----gatggagatagctctctaaactgaagaa 192  Q
    ||    |||||||||||||||||||||| |||||    
T  29599351 gagatggatggagatagctctctaaactaaagaa 29599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 324798 - 324665
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  324798 actaaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggaga 324699  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  324698 gagatggatggagatagctctctaaactaaagaa 324665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 17480972 - 17481109
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaat 147  Q
    ||||||||| ||||||  |||||||||||||||||||||  ||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||| |||    
T  17480972 aactcatggaaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaat 17481071  T
Q  148 tagggtttgtggagagagatggagatagctctctaaac 185  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  17481072 taggatttgtggagagagatggagatagctctttaaac 17481109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 48184352 - 48184225
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||||||||||||||||||||| |||      ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184352 actaaagaacatgtaatcatcaaatcagaat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 48184259  T
Q  163 gaga----tggagatagctctctaaactgaagaa 192  Q
    ||||    |||||||||||||||||||| |||||    
T  48184258 gagatggatggagatagctctctaaactaaagaa 48184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 26355125 - 26354997
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 161  Q
    ||||||||||||||||||||||||||| ||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26355125 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggag 26355026  T
Q  162 a--ga--gatggagatagctctctaaact 186  Q
    |  ||  ||||||||||||||||| ||||    
T  26355025 aaggatggatggagatagctctctgaact 26354997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 6165022 - 6165133
Alignment:
Q  48 aactcatggcaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaaca 145  Q
    |||||||||||||||| |||| |||||  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  6165022 aactcatggcaatcaagtaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaaca 6165121  T
Q  146 attagggtttgt 157  Q
    ||||||||||||    
T  6165122 attagggtttgt 6165133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 16764513 - 16764621
Alignment:
Q  51 tcatggcaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaatt 148  Q
    |||| ||||||||||||| |||||  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  16764513 tcattgcaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaatt 16764612  T
Q  149 agggtttgt 157  Q
    |||||||||    
T  16764613 agggtttgt 16764621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 10801546 - 10801650
Alignment:
Q  53 atggcaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattag 150  Q
    |||| ||||||||||| |||||  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  10801546 atggaaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattag 10801645  T
Q  151 ggttt 155  Q
    |||||    
T  10801646 ggttt 10801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 26014586 - 26014504
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaaca 145  Q
    |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26014586 actaaataacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 20727554 - 20727516
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaat 87  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  20727554 aactcatggcaatcaa-taaagaacatgtaatcatcaaat 20727516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 32397352 - 32397218
Alignment:
Q  63 actaaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattc-aatttcacattaccttacaagttacaacaattagggtttgtggag 161  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32397352 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 32397253  T
Q  162 a--ga--gatggagatagctctctaaactgaagaa 192  Q
    |  ||  |||||||||||||||||||||| |||||    
T  32397252 aaggatggatggagatagctctctaaactaaagaa 32397218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 9303095 - 9302995
Alignment:
Q  91 aatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaag 190  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  9303095 aatcaaaattgaaggaaattacattcaatttcacattacctttcaagttt-aacaattagggtttgtggagagagatggagataactctctgaactggag 9302997  T
Q  191 aa 192  Q
    ||    
T  9302996 aa 9302995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 7171142 - 7171047
Alignment:
Q  67 aagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    |||||||||||||||||| |  ||||||||| |||||| ||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  7171142 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 7171047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 14654645 - 14654704
Alignment:
Q  126 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 185  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  14654645 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 14654704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 32397808 - 32397747
Alignment:
Q  126 ttaccttacaagttacaacaattagggtttgtggaga--gagatggagatagctctctaaac 185  Q
    ||||||||||| |||||| || |||||||||||||||  ||||||||||||||||| |||||    
T  32397808 ttaccttacaatttacaagaactagggtttgtggagagagagatggagatagctctttaaac 32397747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 8359 - 8467
Alignment:
Q  51 tcatggcaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaatt 148  Q
    |||| ||||||||||||| |||||  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  8359 tcattgcaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaatt 8458  T
Q  149 agggtttgt 157  Q
    |||||||||    
T  8459 agggtttgt 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 2996 - 2888
Alignment:
Q  51 tcatggcaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaatt 148  Q
    |||| ||||||||||||| |||||  ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2996 tcattgcaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaatt 2897  T
Q  149 agggtttgt 157  Q
    |||||||||    
T  2896 agggtttgt 2888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 1340 - 1208
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataatt----gaagaaaattacattcaatttcacattaccttacaagttacaa 143  Q
    |||||||||||||||| |||| ||||||||||||||| |||| ||||||||||    |||| ||||||||||||||||||||||||||||||| ||||||    
T  1340 aactcatggcaatcaa-taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaa 1242  T
Q  144 caattagggtttgtggagagagatggagatagct 177  Q
    ||||||| |||||| | |||||||| ||||||||    
T  1241 caattagtgtttgttgtgagagatgaagatagct 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 908 - 1067
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatcatcaaatcataatcataattga----agaaaattacattcaatttcacattaccttacaagttacaa 143  Q
    |||||||||||||||| |||||||||| ||||||||| |||| |||||||||| |    || ||||||||||||||||||||||||||||||| ||||||    
T  908 aactcatggcaatcaa-taaagaacatataatcatcatatcagaatcataattaattaaaggaaattacattcaatttcacattaccttacaaattacaa 1006  T
Q  144 caattagggt---ttgtggagagagatggagatagct--ctctaaactgaagaaggaggag 199  Q
    ||||||||||   ||||||||||||||| ||||||||   ||||||| ||||| |||||||    
T  1007 caattagggtttgttgtggagagagatgaagatagctgaatctaaacagaagatggaggag 1067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 769 - 802
Alignment:
Q  48 aactcatggcaatcaactaaagaacatgtaatca 81  Q
    ||||||||| ||||||||||||||||||||||||    
T  769 aactcatggtaatcaactaaagaacatgtaatca 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 39728 - 39631
Alignment:
Q  65 taaagaacatgtaatcatcaaatcataatcataattgaagaaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 162  Q
    ||||||||| |||||||||| |  ||||||||| |||||| ||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  39728 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 39631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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