View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_33 (Length: 231)
Name: NF9376_low_33
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 22625577 - 22625778
Alignment:
| Q |
20 |
tatacaagctttagcctgttcaaggaatttggcataaaaaaccctagttcagtaaaagaagtggttctgaatgtcaccaaagaaaaggttttgaatttga |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22625577 |
tatacaagctttagcctgttcaaggaatttggcgtaaaaaaccctagttcggtaaaagaagtggttctgaatgtcaccaaagaaaaggttttgtatttga |
22625676 |
T |
|
| Q |
120 |
atattacgtttgtttataagttataacttctctcttcaatttttgatcgattataattactattttttataggtacttgatctgcttaagtgttctctgc |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
22625677 |
atattgcgtttgtttataagttataacttctctcttcaatttttgatcgattataattactatttgttataggtacttgatctgcttaagtgttctttgc |
22625776 |
T |
|
| Q |
220 |
tt |
221 |
Q |
| |
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|| |
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| T |
22625777 |
tt |
22625778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 22633593 - 22633392
Alignment:
| Q |
20 |
tatacaagctttagcctgttcaaggaatttggcataaaaaaccctagttcagtaaaagaagtggttctgaatgtcaccaaagaaaaggttttgaatttga |
119 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
22633593 |
tatacaagctttagtctgttcgaggaatttggcataaaaaaccctagttcggtaaaagaagtggttctgaatttcaccaaagaaaaggttttgtatttga |
22633494 |
T |
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| Q |
120 |
atattacgtttgtttataagttataacttctctcttcaatttttgatcgattataattactattttttataggtacttgatctgcttaagtgttctctgc |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22633493 |
atattgcgtttgtttataagttataacttctctcttcaatttttgatcgattacaattactattttttataggtacttgatctgcttaagtgttctttgc |
22633394 |
T |
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| Q |
220 |
tt |
221 |
Q |
| |
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|| |
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| T |
22633393 |
tt |
22633392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 22623262 - 22623363
Alignment:
| Q |
20 |
tatacaagctttagcctgttcaaggaatttggcataaaa-aaccctagttcagtaaaagaagtggttctgaatgtcaccaaagaaaaggttttgaatttg |
118 |
Q |
| |
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|||||||||||||| ||||||| || |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
22623262 |
tatacaagctttagtttgttcaacgagtttggcataaaaaaaccctagttcggtaaaagaagtggttctgaatgtcactaaagaaaagattttgtatttg |
22623361 |
T |
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| Q |
119 |
aa |
120 |
Q |
| |
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|| |
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|
| T |
22623362 |
aa |
22623363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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