View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_36 (Length: 228)
Name: NF9376_low_36
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_36 |
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| [»] chr8 (5 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 5276275 - 5276492
Alignment:
| Q |
11 |
aaataaatataccttgcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttgt |
110 |
Q |
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| T |
5276275 |
aaatatatataccttgcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttct |
5276374 |
T |
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| Q |
111 |
tgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaa |
210 |
Q |
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| T |
5276375 |
tgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacatattagcatcactaa |
5276474 |
T |
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| Q |
211 |
caatcctcaaatcacacc |
228 |
Q |
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|||||||||||||||||| |
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| T |
5276475 |
caatcctcaaatcacacc |
5276492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 5272296 - 5272513
Alignment:
| Q |
11 |
aaataaatataccttgcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttgt |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5272296 |
aaatatatataccttgcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttct |
5272395 |
T |
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| Q |
111 |
tgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaa |
210 |
Q |
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| T |
5272396 |
tgattaacataaccaggattagagttaatctctgagaagcattcactaattcccaaatgcttcaaaatagtttcaatgtaaaacatattagcatcactaa |
5272495 |
T |
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| Q |
211 |
caatcctcaaatcacacc |
228 |
Q |
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| T |
5272496 |
caatcctcaaatcacacc |
5272513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 5250224 - 5250048
Alignment:
| Q |
52 |
tgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttgttgattaacataaccaggattagtgttaatctcagtgaagta |
151 |
Q |
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| T |
5250224 |
tgcaaccatgtgaatccttattgaaatcatggtaaggtaaaattcttaatcttccttgttgattaacataaccaggattagtgttaatctcagtgaagta |
5250125 |
T |
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| Q |
152 |
ttcacttattcctaaatgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaacaatcctcaaatcacacc |
228 |
Q |
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| T |
5250124 |
ttcacttattcccaaattcttcaaaattgtttcaatgaaaaatgtattagcatcactaacaatcctcaaatcacacc |
5250048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 5269475 - 5269268
Alignment:
| Q |
18 |
tataccttgcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttgttgattaa |
117 |
Q |
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|||||||||||||||||||| || |||| | || |||||||| ||||| || ||||| ||||| ||||| || | | | |||||||| |||||||| |
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| T |
5269475 |
tataccttgcacatgtttgggggacaaagagtg---caaccatgagaagctttgttgaagtcatgataaggcataacttttaatcttccttcttgattaa |
5269379 |
T |
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| Q |
118 |
cataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaacaatcct |
217 |
Q |
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| T |
5269378 |
cataaccaggattggtgttaatctcagagaagcattcactaattcccaaatgcttcaaaattgtgtcaatgaaaatcgtattagcatcgctaacaatcct |
5269279 |
T |
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| Q |
218 |
caaatcacacc |
228 |
Q |
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| T |
5269278 |
caaatcacacc |
5269268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 14944624 - 14944426
Alignment:
| Q |
26 |
gcacatgtttggagggcaaacattgttgcaaccatgtgaagccttattgaaatcatggtaaggtgaaattctaactcttccttgttgattaacataacca |
125 |
Q |
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|||||||||||||||| ||| | ||||||||||||||||||| ||||| ||||| ||||| ||||| | ||| |||| || ||||||||||||| |
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| T |
14944624 |
gcacatgtttggagggtaaaga---gtgcaaccatgtgaagccttgttgaa---gtggtatggtgacattcttagtctaccttcttcattaacataacca |
14944531 |
T |
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| Q |
126 |
ggattagtgttaatctcagtgaag-tattcacttattcctaaatgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaacaat-cctcaaatc |
223 |
Q |
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| T |
14944530 |
agattagtgttaatctctgagaagatattcacttattcccaaatgcttcaaaatagtttcaatgtaaaacacattggcatcgctcacaataactcaaatc |
14944431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 43110263 - 43110420
Alignment:
| Q |
68 |
cttattgaaatcatggtaaggtgaaattctaactcttccttgttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaa |
167 |
Q |
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|||||||| |||||||||||| ||||||| | ||||||| || ||||||||| ||||||||||||||||| | ||| |||| || || || ||| |
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| T |
43110263 |
cttattgagatcatggtaaggcaaaattctcaaccttccttc---atcaacataacctggattagtgttaatctctgagaaacattccctaataccaaaa |
43110359 |
T |
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| Q |
168 |
tgcttcaaaatagtttcaatgtaaaacaaatttgcatcactaacaatcctcaaatcacacc |
228 |
Q |
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||||||| ||| || |||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
43110360 |
tgcttcagaattgtctcaatgaaaaacgtgtttgcatcacttacaatcctcaaatcacacc |
43110420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 26314747 - 26314884
Alignment:
| Q |
91 |
aaattctaactcttccttgttgattaacataaccaggattagtgttaatctcagtgaagtattcacttattcctaaatgcttcaaaatagtttcaatgta |
190 |
Q |
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||||||| | |||||||| || || ||||||||| ||||||||||||||||| | ||| |||| || ||||| || ||||| | ||| || |||||| | |
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| T |
26314747 |
aaattctcaatcttccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattccaaagtgctttagaattgtctcaatgaa |
26314846 |
T |
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| Q |
191 |
aaacaaatttgcatcactaacaatcctcaaatcacacc |
228 |
Q |
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||| ||||||||||| ||||||||||||||||||| |
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| T |
26314847 |
aaatgtgtttgcatcacttacaatcctcaaatcacacc |
26314884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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