View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_37 (Length: 201)
Name: NF9376_low_37
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 49972872 - 49972707
Alignment:
| Q |
18 |
cgtgttcagaactctatagcaatccaacgtacaaccaatataccaaattgtcttcatcatcttggcttcttcctttcaattagtacccaaaatattcaaa |
117 |
Q |
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| T |
49972872 |
cgtgttcagaactctatagcaatccaacgtacaaccaatataccaaattgtcttcatcatcttggcttcttcctttcaattagtacccaaaatattcaaa |
49972773 |
T |
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| Q |
118 |
tagcgatattgcattgatattcatatgtagatcgacaattaatgtgaaggaaaaaccaaacaattt |
183 |
Q |
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| T |
49972772 |
tagcgatattgcattgatattcatatgtagatcgacaattaatgtgaaggaaaaaccaaacaattt |
49972707 |
T |
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