View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9376_low_5 (Length: 369)

Name: NF9376_low_5
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9376_low_5
NF9376_low_5
[»] chr7 (46 HSPs)
chr7 (16-364)||(45841064-45841411)
chr7 (48-282)||(47848607-47848838)
chr7 (61-244)||(36101896-36102076)
chr7 (158-282)||(30200188-30200308)
chr7 (145-253)||(41948478-41948586)
chr7 (158-244)||(42187441-42187527)
chr7 (46-197)||(38135329-38135476)
chr7 (141-244)||(35906409-35906512)
chr7 (177-244)||(42177259-42177326)
chr7 (158-272)||(39811900-39812014)
chr7 (42-244)||(28628045-28628244)
chr7 (141-244)||(12841483-12841586)
chr7 (141-244)||(13859216-13859319)
chr7 (141-244)||(31005194-31005297)
chr7 (141-244)||(34869391-34869494)
chr7 (158-244)||(36514432-36514516)
chr7 (158-244)||(43282376-43282465)
chr7 (141-244)||(49029247-49029350)
chr7 (146-220)||(38920789-38920863)
chr7 (164-282)||(48736130-48736248)
chr7 (164-244)||(27893779-27893857)
chr7 (124-208)||(12966029-12966113)
chr7 (102-245)||(19262603-19262743)
chr7 (42-98)||(30814783-30814839)
chr7 (43-95)||(40830319-40830371)
chr7 (158-241)||(28020938-28021021)
chr7 (145-244)||(14593732-14593835)
chr7 (141-282)||(37617877-37618019)
chr7 (158-244)||(40008642-40008728)
chr7 (202-244)||(48202959-48203001)
chr7 (158-223)||(27021917-27021982)
chr7 (141-282)||(46356064-46356205)
chr7 (42-98)||(44401237-44401293)
chr7 (141-244)||(11593931-11594034)
chr7 (141-244)||(44855380-44855483)
chr7 (159-244)||(5335893-5335976)
chr7 (145-244)||(16013255-16013358)
chr7 (141-239)||(33350014-33350112)
chr7 (133-223)||(40169641-40169731)
chr7 (42-83)||(1011176-1011217)
chr7 (42-83)||(12966145-12966186)
chr7 (124-189)||(35713721-35713786)
chr7 (50-95)||(36245524-36245569)
chr7 (141-266)||(43491257-43491382)
chr7 (43-95)||(14593877-14593929)
chr7 (158-271)||(47796361-47796476)
[»] chr1 (39 HSPs)
chr1 (42-244)||(43423690-43423889)
chr1 (42-223)||(40416363-40416541)
chr1 (42-239)||(38868858-38869052)
chr1 (148-244)||(17815445-17815539)
chr1 (158-271)||(51812469-51812582)
chr1 (102-281)||(14225998-14226175)
chr1 (159-282)||(9599620-9599743)
chr1 (42-223)||(36339915-36340093)
chr1 (108-246)||(19908214-19908352)
chr1 (47-231)||(26016421-26016602)
chr1 (143-244)||(51440975-51441076)
chr1 (65-207)||(13827705-13827844)
chr1 (141-244)||(1210716-1210819)
chr1 (145-244)||(9509289-9509388)
chr1 (53-208)||(5338731-5338883)
chr1 (218-282)||(4379938-4380002)
chr1 (42-244)||(32404638-32404836)
chr1 (42-223)||(3818968-3819146)
chr1 (141-244)||(34792557-34792660)
chr1 (42-198)||(8796226-8796379)
chr1 (42-206)||(48431518-48431679)
chr1 (145-282)||(27848017-27848153)
chr1 (163-244)||(35828780-35828861)
chr1 (124-277)||(40419577-40419730)
chr1 (145-282)||(1661359-1661500)
chr1 (161-281)||(16943109-16943228)
chr1 (158-213)||(7921837-7921892)
chr1 (145-224)||(8343070-8343149)
chr1 (141-223)||(22090088-22090170)
chr1 (158-244)||(32231179-32231265)
chr1 (65-244)||(38877478-38877652)
chr1 (46-95)||(8342997-8343046)
chr1 (183-244)||(43375829-43375889)
chr1 (141-244)||(8671891-8671992)
chr1 (43-95)||(10272375-10272427)
chr1 (164-208)||(13827948-13827992)
chr1 (178-282)||(39422287-39422390)
chr1 (141-213)||(51602058-51602130)
chr1 (210-282)||(52442781-52442853)
[»] chr4 (48 HSPs)
chr4 (158-244)||(33709895-33709981)
chr4 (46-272)||(54470150-54470373)
chr4 (158-282)||(49987361-49987485)
chr4 (158-281)||(51252686-51252807)
chr4 (178-244)||(10775667-10775733)
chr4 (158-244)||(44047573-44047659)
chr4 (141-239)||(53707770-53707868)
chr4 (141-282)||(56375223-56375364)
chr4 (145-244)||(25257793-25257890)
chr4 (42-175)||(13805377-13805507)
chr4 (141-244)||(31960022-31960125)
chr4 (141-244)||(48174301-48174404)
chr4 (141-244)||(52569723-52569826)
chr4 (158-244)||(37797823-37797909)
chr4 (41-95)||(45569120-45569174)
chr4 (178-282)||(17900413-17900517)
chr4 (158-282)||(38570972-38571095)
chr4 (42-94)||(49987526-49987578)
chr4 (108-244)||(10209009-10209141)
chr4 (193-272)||(20998955-20999034)
chr4 (166-282)||(31403250-31403369)
chr4 (42-135)||(47147453-47147543)
chr4 (141-239)||(33227185-33227283)
chr4 (48-98)||(34233142-34233192)
chr4 (179-282)||(43070014-43070113)
chr4 (165-282)||(50662322-50662437)
chr4 (180-282)||(45423552-45423650)
chr4 (165-282)||(50680672-50680789)
chr4 (145-244)||(50471499-50471596)
chr4 (42-98)||(53540404-53540460)
chr4 (158-244)||(28236156-28236240)
chr4 (108-244)||(28497459-28497596)
chr4 (158-221)||(31459024-31459087)
chr4 (141-244)||(33191056-33191159)
chr4 (178-282)||(44360016-44360124)
chr4 (124-244)||(46715563-46715678)
chr4 (41-95)||(7682021-7682075)
chr4 (141-223)||(43433916-43433998)
chr4 (141-239)||(47265410-47265508)
chr4 (42-75)||(33225945-33225978)
chr4 (47-92)||(38865758-38865803)
chr4 (226-282)||(2588914-2588970)
chr4 (193-282)||(34233291-34233382)
chr4 (159-223)||(35555873-35555937)
chr4 (42-98)||(37488205-37488261)
chr4 (141-213)||(37773659-37773731)
chr4 (131-223)||(41192828-41192920)
chr4 (141-244)||(48622751-48622852)
[»] chr5 (30 HSPs)
chr5 (41-244)||(7359371-7359570)
chr5 (43-253)||(14749269-14749476)
chr5 (43-240)||(31636033-31636225)
chr5 (42-243)||(15489604-15489802)
chr5 (108-208)||(43475247-43475347)
chr5 (141-244)||(2075682-2075785)
chr5 (43-223)||(2712936-2713113)
chr5 (165-282)||(32516491-32516606)
chr5 (145-244)||(33667189-33667286)
chr5 (141-244)||(4496355-4496458)
chr5 (42-199)||(42199302-42199456)
chr5 (141-239)||(24178486-24178584)
chr5 (42-277)||(6888931-6889163)
chr5 (42-98)||(9235163-9235217)
chr5 (159-240)||(18351134-18351215)
chr5 (159-237)||(43558053-43558133)
chr5 (159-272)||(30588396-30588505)
chr5 (159-282)||(34194724-34194845)
chr5 (141-244)||(1275236-1275338)
chr5 (158-244)||(11002648-11002732)
chr5 (41-95)||(3775178-3775232)
chr5 (40-98)||(5305753-5305811)
chr5 (145-223)||(34273019-34273097)
chr5 (125-278)||(4026527-4026679)
chr5 (42-95)||(9917562-9917615)
chr5 (42-95)||(12576972-12577025)
chr5 (57-282)||(21952284-21952512)
chr5 (42-98)||(6788181-6788237)
chr5 (141-244)||(12492592-12492698)
chr5 (211-282)||(33006595-33006664)
[»] chr3 (26 HSPs)
chr3 (42-273)||(39600793-39601021)
chr3 (108-282)||(19736929-19737104)
chr3 (108-282)||(19757832-19758007)
chr3 (124-282)||(36820152-36820308)
chr3 (145-268)||(49503766-49503889)
chr3 (141-244)||(47233804-47233907)
chr3 (42-208)||(42510128-42510289)
chr3 (158-239)||(54128354-54128435)
chr3 (158-253)||(29600861-29600957)
chr3 (42-199)||(21200564-21200718)
chr3 (41-96)||(33755453-33755508)
chr3 (145-244)||(52138771-52138870)
chr3 (162-244)||(3987018-3987100)
chr3 (158-244)||(26388452-26388538)
chr3 (178-244)||(50249355-50249421)
chr3 (42-95)||(31261054-31261107)
chr3 (42-95)||(40982013-40982066)
chr3 (145-222)||(50960845-50960922)
chr3 (158-221)||(26490309-26490372)
chr3 (141-244)||(28245408-28245511)
chr3 (47-98)||(40116585-40116636)
chr3 (178-244)||(31454471-31454536)
chr3 (42-223)||(45289203-45289383)
chr3 (41-89)||(46367499-46367547)
chr3 (42-98)||(54365087-54365143)
chr3 (162-275)||(55244242-55244351)
[»] chr2 (27 HSPs)
chr2 (42-282)||(9556481-9556717)
chr2 (42-244)||(38434922-38435122)
chr2 (42-244)||(37481729-37481928)
chr2 (159-241)||(11412695-11412777)
chr2 (42-244)||(43752059-43752258)
chr2 (49-219)||(18958903-18959074)
chr2 (158-244)||(13240970-13241056)
chr2 (42-118)||(33504320-33504393)
chr2 (192-282)||(36039156-36039246)
chr2 (131-223)||(11017306-11017398)
chr2 (42-139)||(26784452-26784546)
chr2 (145-244)||(41763254-41763352)
chr2 (158-244)||(19024151-19024237)
chr2 (145-282)||(8180713-8180850)
chr2 (42-95)||(19235096-19235149)
chr2 (172-243)||(7615271-7615340)
chr2 (141-209)||(24583840-24583908)
chr2 (158-244)||(40759070-40759157)
chr2 (158-207)||(14197387-14197437)
chr2 (201-282)||(21834486-21834567)
chr2 (178-282)||(23714506-23714607)
chr2 (178-282)||(24102178-24102279)
chr2 (42-83)||(33287550-33287591)
chr2 (160-220)||(12141539-12141599)
chr2 (42-98)||(37452338-37452394)
chr2 (43-213)||(44437834-44438001)
chr2 (54-98)||(45436956-45437000)
[»] chr8 (40 HSPs)
chr8 (43-282)||(32043523-32043759)
chr8 (46-244)||(5908613-5908812)
chr8 (182-272)||(44681288-44681378)
chr8 (42-267)||(10080019-10080239)
chr8 (158-244)||(9695602-9695688)
chr8 (159-244)||(13171875-13171960)
chr8 (178-244)||(11733718-11733784)
chr8 (163-240)||(42493536-42493611)
chr8 (42-91)||(4011204-4011253)
chr8 (158-219)||(41444551-41444612)
chr8 (164-272)||(2518623-2518730)
chr8 (211-282)||(16252868-16252937)
chr8 (159-239)||(30113423-30113503)
chr8 (141-282)||(36545080-36545223)
chr8 (141-244)||(36565449-36565552)
chr8 (42-170)||(35914713-35914838)
chr8 (162-244)||(39051113-39051195)
chr8 (41-98)||(16705861-16705918)
chr8 (201-282)||(28300380-28300461)
chr8 (184-244)||(35601992-35602050)
chr8 (42-95)||(45512607-45512660)
chr8 (42-102)||(5127382-5127442)
chr8 (42-98)||(35643718-35643774)
chr8 (179-282)||(36069576-36069676)
chr8 (145-244)||(36395161-36395261)
chr8 (43-98)||(2216402-2216457)
chr8 (178-244)||(25985492-25985556)
chr8 (158-244)||(2796528-2796614)
chr8 (158-244)||(7046305-7046391)
chr8 (158-208)||(18474185-18474235)
chr8 (43-92)||(24399902-24399951)
chr8 (159-224)||(29700267-29700332)
chr8 (145-277)||(30748397-30748527)
chr8 (42-95)||(32931078-32931131)
chr8 (158-223)||(40813316-40813381)
chr8 (141-213)||(12491346-12491418)
chr8 (141-244)||(18125146-18125247)
chr8 (46-148)||(38178376-38178475)
chr8 (42-94)||(38392005-38392057)
chr8 (41-94)||(41444451-41444506)
[»] scaffold0018 (3 HSPs)
scaffold0018 (141-244)||(31439-31542)
scaffold0018 (145-224)||(44080-44159)
scaffold0018 (42-95)||(178532-178585)
[»] chr6 (11 HSPs)
chr6 (145-277)||(33083996-33084128)
chr6 (42-97)||(34617-34672)
chr6 (177-244)||(12134145-12134212)
chr6 (85-223)||(14389323-14389457)
chr6 (42-83)||(9593820-9593861)
chr6 (159-224)||(21870299-21870364)
chr6 (111-207)||(6293564-6293660)
chr6 (156-208)||(7513614-7513666)
chr6 (42-98)||(8364670-8364726)
chr6 (42-207)||(24665818-24665981)
chr6 (41-93)||(33997655-33997707)
[»] scaffold0050 (1 HSPs)
scaffold0050 (42-98)||(45556-45611)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 45841064 - 45841411
Alignment:
Q  16 ctatatcatatttctatctaaagcattttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45841064 ctatatcatatttctatctaaagcattttcttaatagtttctctcgtaatttttctaggtgttcctctgtctctagtgatctggcgactacgctccatct 45841163  T
Q  116 gatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctc 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45841164 gatttatgctccttgctacaaaatgtacaggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgtta-ctc 45841262  T
Q  216 aactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaacgtctaaagaagaaaatattgaaaactacataaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45841263 aactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaacatctaaagaagaaaatattgaaaactacataaa 45841362  T
Q  316 cataaatccaaatttaccatttcattgaggagcaaggactgatcttgtt 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45841363 cataaatccaaatttaccatttcattgaggagcaaggactgatcttgtt 45841411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 282
Target Start/End: Complemental strand, 47848838 - 47848607
Alignment:
Q  48 aatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggt 147  Q
    |||||||||||| ||| ||||||||| | |||||||| ||||||||||| |   ||||  ||||||||||| ||  ||||||  |||| ||| |||  ||    
T  47848838 aatagtttctcttatagtttttctagttcttcctctgcctctagtgatcag---actatcctccatctgatctactctccttagtacagaatttacaagt 47848742  T
Q  148 catctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccg 247  Q
    | |||| |  ||||||||||||| |||| |||| |||||||| ||||||||| |||||| | |||| ||||||||| ||||||||| ||| |||| | |     
T  47848741 cttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaactctctctctaatgttatcacttctgatcc 47848642  T
Q  248 tatctcttctaagcttaccacacattcaacacaac 282  Q
    |||| | ||||  |||||||||||| |||||||||    
T  47848641 tatcccgtctagtcttaccacacatccaacacaac 47848607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 36101896 - 36102076
Alignment:
Q  61 ataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcat 160  Q
    ||||||||||||||| |||||||| |||||||||||||   ||||  |||||| |||| ||  |||| || |||||||| ||  |||| |||| || |||    
T  36101896 ataatttttctaggtcttcctctgcctctagtgatctg---actattctccatatgatctactctccctgttacaaaatctataggtcttctctctacat 36101992  T
Q  161 gcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
     ||||||||| |||| |||| |||||| | |||||||||||||||||| |||||  |||||   || |||||||||||||||||    
T  36101993 ccccaaaccacctaagcctattttccaacatcttttctattataggtgctaccttcactcttcctcaaatgttgtcatttctaa 36102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 30200188 - 30200308
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    |||||| ||| || |||| ||||||||||||| ||||||||| |||||||||||||  |||||    |||||||||||||||||||| | |||| | |||    
T  30200188 catgccaaaatcacctaagcctagtttccaccatcttttctactataggtgttaccctaactc----tctaatgttgtcatttctaatcatatcccatct 30200283  T
Q  258 aagcttaccacacattcaacacaac 282  Q
    || |||||||||||| |||||||||    
T  30200284 aatcttaccacacatccaacacaac 30200308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 41948586 - 41948478
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || |||||||||||||  ||| ||||||||||||| ||||||||||| || ||| |||  ||||||||  ||||||||||||||||||||    
T  41948586 ggtcttctctctacatgcccaaaccacttaagcctagtttccaccatcttttctattgtaagtgctacgccaactctcactctaatgttgtcatttctaa 41948487  T
Q  245 ccgtatctc 253  Q
     ||||||||    
T  41948486 tcgtatctc 41948478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 42187527 - 42187441
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| |||| |||||||| |||||||||||||||||| |||| | ||||||| ||||||| || |||||||||    
T  42187527 catgcccaaaccacctaagcctattttccaccatcttttctattataggtgctaccccgactctctttctaatgctgccatttctaa 42187441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 38135329 - 38135476
Alignment:
Q  46 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 145  Q
    |||||||||||||| ||| ||||||||||| ||| |||| ||||| |||||||   ||||  ||||||||||| ||| |||||| ||||||||| ||| |    
T  38135329 ttaatagtttctcttatactttttctaggtcttcatctgcctctaatgatctg---actatcctccatctgatctat-ctccttactacaaaatctactg 38135424  T
Q  146 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttc 197  Q
    ||| |||  || |||| |||||||| |||| |||| |||||||| |||||||    
T  38135425 gtcttctgtctacatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 35906409 - 35906512
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| |||||||     
T  35906409 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggtgtcattc 35906508  T
Q  241 ctaa 244  Q
    ||||    
T  35906509 ctaa 35906512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 42177259 - 42177326
Alignment:
Q  177 cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||| |||| ||||||||| |||||||| |||||||||||||| |||||| |||||||||||||    
T  42177259 cctagttttcaccatcttttctactataggtgatacctcaactctctctctaatattgtcatttctaa 42177326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 39812014 - 39811900
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    ||||||||||| | |||| || ||||| |||| | |||||||| ||||||| | || ||||||||| |||||||||||||||||||| | |||| | |||    
T  39812014 catgcccaaactacctaagccgagttttcaccattttttctatgataggtgctgccccaactctctctctaatgttgtcatttctaatcctatcacgtct 39811915  T
Q  258 aagcttaccacacat 272  Q
    |  ||||||||||||    
T  39811914 agtcttaccacacat 39811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 28628045 - 28628244
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||  |||| ||||| ||   ||||  ||||||| ||| ||  |||||| ||||| ||| |    
T  28628045 tttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttg---actatcctccatcggatctactctccttactacataatct 28628141  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    || |||  ||||  | ||||||||||||| |||| || | |||||||| || |||||| | |||||| |||  |||||| || ||||||||||| |||||    
T  28628142 acaggttttctctttacatgcccaaaccacctaagccaattttccaccatcatttctactctaggtgctactccaactccctctctaatgttgtaatttc 28628241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 12841483 - 12841586
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| |||||||  ||||||     
T  12841483 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggggtcattc 12841582  T
Q  241 ctaa 244  Q
    ||||    
T  12841583 ctaa 12841586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 13859216 - 13859319
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  13859216 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 13859315  T
Q  241 ctaa 244  Q
    ||||    
T  13859316 ctaa 13859319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 31005297 - 31005194
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||| |||     
T  31005297 tacgggtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgttattc 31005198  T
Q  241 ctaa 244  Q
    ||||    
T  31005197 ctaa 31005194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 34869494 - 34869391
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  34869494 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 34869395  T
Q  241 ctaa 244  Q
    ||||    
T  34869394 ctaa 34869391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 36514432 - 36514516
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||  |||||||||||| |||||||    
T  36514432 catgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctc--tctaatgttgtcctttctaa 36514516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 43282465 - 43282376
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatct---aatgttgtcatttctaa 244  Q
    |||||||||  || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||| |||   |||||||||||||||||    
T  43282465 catgcccaattcacctaagcctagtttccaccgacttttctactataggtgctaccccaactctctctctctaaatgttgtcatttctaa 43282376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 49029350 - 49029247
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  49029350 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 49029251  T
Q  241 ctaa 244  Q
    ||||    
T  49029250 ctaa 49029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 38920863 - 38920789
Alignment:
Q  146 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactc 220  Q
    |||||||| || |||||||||||||  ||| ||||||||||||| ||||||||| |||||||| |||| ||||||    
T  38920863 gtcatctctctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaactc 38920789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 48736130 - 48736248
Alignment:
Q  164 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctt 263  Q
    ||||||| ||||  ||||||||  || ||||||||| | |||||| |||| ||||||||| | |||||| |||||||||||   |||||| ||||  |||    
T  48736130 caaaccacctaagtctagtttctcccatcttttctactgtaggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtctt 48736229  T
Q  264 accacacattcaacacaac 282  Q
    |||||||||||||| ||||    
T  48736230 accacacattcaacgcaac 48736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 27893779 - 27893857
Alignment:
Q  164 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||| |||| |||| |||||||| ||| ||||| ||||||||||||||||||||||  |||||| ||||| |||||||    
T  27893779 caaaccacctaagcctattttccaccatctattctactataggtgttacctcaactctc--tctaatattgtcgtttctaa 27893857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 12966113 - 12966029
Alignment:
Q  124 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    |||||| ||||| ||| |||||||| |||| || ||||||||||||| |||| | ||||||||||| ||||||||  ||||||||    
T  12966113 ctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggtg 12966029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 19262603 - 19262743
Alignment:
Q  102 actacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt 201  Q
    ||||| ||||||||||| ||  || ||| ||||||| | ||| |||| |||| || ||||| ||||||| |||| || |||||| ||| |||||||||      
T  19262603 actacactccatctgatctactcttcttactacaaa-tctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctaca 19262701  T
Q  202 ataggtgttacctcaactctctatctaatgttgtcatttctaac 245  Q
    ||||||| |||| |||||||||  ||||| ||||||||||||||    
T  19262702 ataggtgctaccccaactctct--ctaatattgtcatttctaac 19262743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 30814783 - 30814839
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||||||||| ||| | ||||||||| |||||||| |||||||||||||    
T  30814783 tttcttaatagtttctcttatagtgtttctaggtcttcctctgcctctagtgatctg 30814839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 40830371 - 40830319
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||||||| |||  |||||||||| |||||||||||||||||||    
T  40830371 ttcttaatagtttctcttatagattttctaggtcttcctctgtctctagtgat 40830319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 28021021 - 28020938
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||||||||||||| |||| || |||||||||| |||||||||  ||| ||| |||| ||||||| | ||||||||| |||||||    
T  28021021 catgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgctaccccaactctttctctaatgttatcatttc 28020938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 14593835 - 14593732
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctca----actctctatctaatgttgtcattt 240  Q
    |||| ||||||| |||||||||| || ||||  |||||||| ||| | ||||||| ||||||||| ||| ||    ||||||| ||||||||||||||||    
T  14593835 ggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttctactataggtgtcaccccagctcactctctctctaatgttgtcattt 14593736  T
Q  241 ctaa 244  Q
    ||||    
T  14593735 ctaa 14593732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 37618019 - 37617877
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaaccta-gtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||||||| |||| || ||||||||||||| |||| ||||  |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  37618019 tacgggtcttctctctacatgcccaaaccatctaagcctatttttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 37617920  T
Q  240 tctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
     |||| | |||||  ||||  |||||||| ||| |||| ||||    
T  37617919 cctaatcctatcttgtctagtcttaccactcatccaacgcaac 37617877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 40008642 - 40008728
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgtt--acctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| || |||||||||| |||||||| | |||||||||   || ||||||||  ||||||||||||||||||||    
T  40008642 catgcccaaaccacctaatccgagtttccaccatcttttctttgataggtgtttatccccaactctc--tctaatgttgtcatttctaa 40008728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 48202959 - 48203001
Alignment:
Q  202 ataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  48202959 ataggtgttaccccaactctctctctaatgttgtcatttctaa 48203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 27021917 - 27021982
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||||||||||| |||| |||||||| ||||  |||||||| |||||||| |||| |||||||||    
T  27021917 catgcccaaaccacctaagcctagttttcaccaacttttctactataggtgctaccccaactctct 27021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 46356064 - 46356205
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||| ||| |||| || ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | | ||||| ||| ||| |||||||     
T  46356064 tacgtgtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccattctctctctgatggtgtcattc 46356163  T
Q  241 ctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||| | ||||   ||||  |||||||| |||||||| ||||    
T  46356164 ctaatcctatcctgtctagtcttaccactcattcaacgcaac 46356205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 44401237 - 44401293
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||||||||| |||||||||||||||  |||||   |||||||||||||    
T  44401237 tttcttaatagtttctcttataatttttctaggtcatcctccacctctagtgatctg 44401293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 11594034 - 11593931
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| | || |||| |||  |||||||| |||||||| |||| | ||||||| || |||| |||||||     
T  11594034 tacgggtcttctctctacatgcccaaaccatctaaccgtattttctaccaacttttctactataggtgctacccccactctctctcaaatggtgtcattc 11593935  T
Q  241 ctaa 244  Q
    ||||    
T  11593934 ctaa 11593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 44855380 - 44855483
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||  || | | ||||||| ||||||| |||||||     
T  44855380 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtactatccccactctctctctaatggtgtcattc 44855479  T
Q  241 ctaa 244  Q
    ||||    
T  44855480 ctaa 44855483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 5335976 - 5335893
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||||| ||||  |||||||| ||| ||||| ||| ||||| || |||| ||||||||  ||||||||| ||||||||||    
T  5335976 atgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctaccccaactctc--tctaatgttatcatttctaa 5335893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 16013358 - 16013255
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctca----actctctatctaatgttgtcattt 240  Q
    |||| ||||||| |||||||||| || ||||  |||||||| ||| | |||| || ||||||||| ||| ||    ||||||| ||||||||||||||||    
T  16013358 ggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttgtactataggtgtcaccccagctcactctctctctaatgttgtcattt 16013259  T
Q  241 ctaa 244  Q
    ||||    
T  16013258 ctaa 16013255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 33350014 - 33350112
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| | |  |||||||| ||||||||  ||| | ||||||| ||||||| |||||||    
T  33350014 tacgggtcttctctctacatgcccaaaccatctaagcctattttctagcaacttttctactataggtgcaacccccactctctctctaatggtgtcatt 33350112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 40169731 - 40169641
Alignment:
Q  133 acaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||||| |||| ||| | || || ||||||||||||| |||| |||| |||||||| ||||||||| |||| ||| |||| ||| |||||    
T  40169731 acaaaatctacgtgtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctaccccaattctct 40169641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 1011217 - 1011176
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctct 83  Q
    |||| ||||| ||||||||||||||||||||||| |||||||    
T  1011217 tttcctaataatttctctcataatttttctaggtcttcctct 1011176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 12966186 - 12966145
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctct 83  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  12966186 tttcttaatagtttctcttatagtttttctaggtcttcctct 12966145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 35713786 - 35713721
Alignment:
Q  124 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccacc 189  Q
    |||||| |||||||||||||  ||| |||| || ||||||||||||| |||| |||| ||||||||    
T  35713786 ctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacctaagcctattttccacc 35713721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 36245524 - 36245569
Alignment:
Q  50 tagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  36245524 tagtttctcttatagtttttataggtcttcctctgtctctagtgat 36245569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 43491382 - 43491257
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||   |||| || ||||||||||||| | |||||||  | |||| |||||||     
T  43491382 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttatactataggtgttacccctactctctccccaatggtgtcattc 43491283  T
Q  241 ctaaccgtatctcttctaagcttacc 266  Q
    |||| | |||| | ||||| ||||||    
T  43491282 ctaatcatatcccatctaatcttacc 43491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 14593929 - 14593877
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||  ||||||||||    
T  14593929 ttcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgat 14593877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 47796361 - 47796476
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct--ctatctaatgttgtcatttctaaccgtatctctt 255  Q
    ||||||||||||| |||  |||| |||| |||  |||||||| ||||| || |||  |||||||  ||||||||| ||||||||||||| | |||| | |    
T  47796361 catgcccaaaccacctacgcctattttcaaccaccttttctactatagttggtactccaactctctctatctaatattgtcatttctaatcctatcccat 47796460  T
Q  256 ctaagcttaccacaca 271  Q
    |||  |||||||||||    
T  47796461 ctagtcttaccacaca 47796476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 43423889 - 43423690
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    ||||||||| || |||||  |||||||||||||| |||||||  |||||||||| || | ||||   |||||||  | ||  || ||| ||||| ||| |    
T  43423889 tttcttaatggtctctcttgtaatttttctaggtcttcctctacctctagtgatttgactacta---tccatctagtctactctacttactacataatct 43423793  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||  ||| |||| || |||| |||||||| |||| ||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||| ||||||||    
T  43423792 acaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgtggtcatttc 43423693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 40416541 - 40416363
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||| ||| ||| ||||||||||| ||| ||||||| | ||||||||   ||||  || |||||||| ||  |||||| ||||||||| |    
T  40416541 tttcttaatagtttgtcttatagtttttctaggtcttcttctgtctttggtgatctg---actatcctgcatctgatctactctccttactacaaaatct 40416445  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    || | || |||| || |||||| |||||| |||| ||| ||||||||| ||||||||| |||||||| |||  |||||||||    
T  40416444 acagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactataggtgctactccaactctct 40416363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 38869052 - 38868858
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||| ||||||| ||| ||||||||||| ||| |||| ||||| |||| ||   ||||| |||||||| || ||  ||||| |||| | ||| |    
T  38869052 tttcttaataatttctcttatagtttttctaggtcttcttctgcctctaatgatttg---actaccctccatctaatctactctcctcgctagagaatct 38868956  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    ||  ||  |||| || ||||||||||||| |||| || |||||||||| |||||||||| ||||||| |||  |||| |||| | |||||||||||||    
T  38868955 actagtgttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggtgctactccaaccctctctttaatgttgtcatt 38868858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 17815539 - 17815445
Alignment:
Q  148 catctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||| ||  |||||||  ||||| |||||| |||||||||||||    
T  17815539 catctctctacatgcccaaaccaactaagcctagtttccaccatcttttccattataagtcctacctca--tctctctctaatattgtcatttctaa 17815445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 51812582 - 51812469
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    |||||||||| ||  ||| ||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| || ||||||||||| | ||||   |||    
T  51812582 catgcccaaatcacataagcctagtttccaccatcttttctactatagttgttaccccaactctctctctaaagtagtcatttctaatcttatcgtgtct 51812483  T
Q  258 aagcttaccacaca 271  Q
    || |||||||||||    
T  51812482 aatcttaccacaca 51812469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 14225998 - 14226175
Alignment:
Q  102 actacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt 201  Q
    |||||||||||| |||| ||  |||||| ||||||||| ||| ||    ||| || ||||||||||||| |||| |||| |||||||| ||||||||||     
T  14225998 actacgctccatgtgatctactctccttactacaaaatctacaggaatcctctctacatgcccaaaccacctaagcctattttccaccatcttttctatg 14226097  T
Q  202 ataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaa 281  Q
    ||||||| |||  ||||||||  || ||||||| ||||||||| | ||||   ||||  |||||||||||| ||||||||    
T  14226098 ataggtgctactgcaactctc--tccaatgttgccatttctaatcctatcatgtctagccttaccacacatccaacacaa 14226175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 9599620 - 9599743
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 258  Q
    |||||| ||||| |||| |||| |||| ||| ||||||||| ||||||||||||  ||||||||| ||||||| ||||||| |||| | |||| | ||||    
T  9599620 atgcccgaaccacctaagcctattttctaccatcttttctactataggtgttactccaactctctctctaatgatgtcattcctaatcatatcccgtcta 9599719  T
Q  259 agcttaccacacattcaacacaac 282  Q
      |||||||| ||| |||||||||    
T  9599720 gtcttaccactcatccaacacaac 9599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 36339915 - 36340093
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||  ||||||||||||   |  ||  |||||||||||  |  | |||| ||||||||| |    
T  36339915 tttcctaatagtttctctgatagtttttctaggtcttcctctacctctagtgatct---aggtatcctccatctgatcaacccgccttactacaaaatct 36340011  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |  |||| |||| || |||| | |||||| ||||||||| |||||||| ||||||||| |||||||| |||  |||||||||    
T  36340012 ataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatataggtgctacaccaactctct 36340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 19908214 - 19908352
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    |||||||||||||   |||||| ||||| ||| ||| |||  |||| || |||||||||| || |||||| | |||||| || |||||| || |||||||    
T  19908214 ctccatctgatttgctctccttactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggt 19908313  T
Q  208 gttacctcaactctctatctaatgttgtcatttctaacc 246  Q
    | |||| ||||||||| | |||| |||||||||||||||    
T  19908314 gctaccacaactctctctttaattttgtcatttctaacc 19908352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 26016602 - 26016421
Alignment:
Q  47 taatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacggg 146  Q
    ||||||||||||| ||| ||||||||||| | |   |  |||||||||||||   ||| | || |||||||| ||  |||||||||||| |||| |  ||    
T  26016602 taatagtttctcttatagtttttctaggtctactcttacctctagtgatctg---actccccttcatctgatctaatctccttgctacagaatgcatagg 26016506  T
Q  147 tcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatg 231  Q
    || |||  || ||| ||||||||| ||||| |||||||| ||| ||||||||  ||||||||||||| ||||||||| |||||||    
T  26016505 tcttctttctacatacccaaaccacctaaatctagtttctaccatcttttctcatataggtgttaccccaactctctctctaatg 26016421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 51440975 - 51441076
Alignment:
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 242  Q
    |||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| ||||||| ||    
T  51440975 cgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctaatggtgtcattcct 51441074  T
Q  243 aa 244  Q
    ||    
T  51441075 aa 51441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 13827705 - 13827844
Alignment:
Q  65 tttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgccc 164  Q
    ||||||||||| |||||||| |||||||||||||   |||| | ||||| |||| ||  |||||| ||||| ||| |||   || |||| || |||| ||    
T  13827705 tttttctaggtcttcctctgcctctagtgatctg---actatgttccatatgatctactctccttactacagaatctacacttcttctctctacatgtcc 13827801  T
Q  165 aaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    |||||| || | ||||||||||||||||||||||| |||||||    
T  13827802 aaaccaccttaccctagtttccaccgtcttttctactataggt 13827844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 1210819 - 1210716
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  1210819 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 1210720  T
Q  241 ctaa 244  Q
    ||||    
T  1210719 ctaa 1210716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 9509388 - 9509289
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||| | |||| |||| |||  ||| ||||||||| |||||||| |||| ||||||||| ||||||| ||||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 5338883 - 5338731
Alignment:
Q  53 tttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatct 152  Q
    ||||||| ||| ||||||||||| | | |||| |||||||||||||   | ||  ||||||||||| ||  |||||| ||| |  || ||| |||| |||    
T  5338883 tttctcttatagtttttctaggtctacttctgcctctagtgatctg---aatatcctccatctgatctactctccttactaaagcatctacaggtcttct 5338787  T
Q  153 cactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    | |||||||||||||||| |||| |  |||||||||| ||||||||| ||||||||    
T  5338786 ctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtg 5338731  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 4380002 - 4379938
Alignment:
Q  218 ctctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||||| |||||||||||||||||||| | ||||| |||||  |||||||||||| |||||||||    
T  4380002 ctctctctctaatgttgtcatttctaatcatatcttttctagtcttaccacacatccaacacaac 4379938  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 32404638 - 32404836
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||| ||||| |||||||  |||| ||||| ||   ||||  ||||||||  | ||  |||||| ||| | ||| |    
T  32404638 tttcctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatg---actatcctccatcttctctactctccttactatagaatct 32404734  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    || |||| |||| || |||  |||||||| |||| |||| |||||||| |||||| || ||||||||||||| |||||| || || ||||||||| ||||    
T  32404735 acaggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc-caactcactctcgaatgttgtcgtttc 32404833  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 3818968 - 3819146
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||||| | ||   | ||| ||||||||||| ||  ||| || ||| | |||      
T  3818968 tttcttaatagtttctcttatagtttttcaaggtcttcctctttctctagtggtttg---attaccctccatctgatctactctctttactagagaatcc 3819064  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||  ||| |||  || |||||||||||||  |||  |||||| ||||| |||||||||  ||||||| ||||||||||||||    
T  3819065 acaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggtgctacctcaactctct 3819146  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 34792557 - 34792660
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| | |||||     
T  34792557 tacgggtcttctctctacatgcccaaaccatctaagcctactttctaccaacttttctactataggtgctacccccactctctctctaatggtttcattc 34792656  T
Q  241 ctaa 244  Q
    ||||    
T  34792657 ctaa 34792660  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 8796379 - 8796226
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| | | ||||| | ||| |||||||| |||||||||||||   ||||  ||||||| ||||||  |||||| |||| |||  |    
T  8796379 tttcttaatagtttctcttaaagtttttattggtcttcctctgcctctagtgatctg---actatcctccatccgatttactctccttactacgaaacct 8796283  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttct 198  Q
    ||  ||| | || || |||| |||||||| ||||||||| |||||||| | ||||||    
T  8796282 acatgtcttatctctacatgtccaaaccacctaaacctattttccaccttgttttct 8796226  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 48431518 - 48431679
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| ||| ||||| | ||| |||||||  |||| || ||| |   ||||  |||||||||||  |  ||| || ||||||||| |    
T  48431518 tttcttaatagtttctcttatagtttttttgggtcttcctctacctcttgtaatccg---actatcctccatctgatcaactctctttactacaaaatct 48431614  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattatagg 206  Q
    ||  ||| |||| || ||||||||||||| |||| |||| |||||||| ||||||||| ||||||    
T  48431615 acaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactatagg 48431679  T

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Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 27848017 - 27848153
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| |||||||||||||||| |||| | || |||| ||| |||||||||  | ||||| |||| ||||||||| ||||||| ||| ||| |||     
T  27848017 ggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaactctctctctaatggtgttattcctat 27848116  T
Q  245 ccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    || |||| | ||||  |||||||| ||| |||||||||    
T  27848117 cc-tatcccgtctagtcttaccactcatccaacacaac 27848153  T

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Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 35828780 - 35828861
Alignment:
Q  163 ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||| |||| |||| |||||||| |||||||||  ||||||| |||   |||||||| |||||| |||||||||||||    
T  35828780 ccaaaccacctaaccctattttccaccatcttttctaccataggtgctactcaaactctctctctaatattgtcatttctaa 35828861  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 40419730 - 40419577
Alignment:
Q  124 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||||||||| |||  ||  ||| |||| || |||||||||||||  |||  |||||| | ||| ||| ||||| |||| ||  |||| |||||||||    
T  40419730 ctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatctattctactataagttctaccccaactctct 40419631  T
Q  224 atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 277  Q
     ||||||||||||||||||||   |||||| ||||   |||||| |||||||||    
T  40419630 ctctaatgttgtcatttctaattctatctcatctagttttaccatacattcaac 40419577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 1661500 - 1661359
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt----t 240  Q
    |||| |||| || ||||| ||||||| || | |||| |||||||| ||||||||| |||||||| |||| ||||||||| || ||| ||||||||    |    
T  1661500 ggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaactctctctcaaatattgtcattcattt 1661401  T
Q  241 ctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||| | |||| | ||||  |||| || ||||||||||||||    
T  1661400 ctaatcctatcacatctagtcttatcagacattcaacacaac 1661359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 16943228 - 16943109
Alignment:
Q  161 gcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaag 260  Q
    |||||||||| ||||| |||||||||||| ||||||||| |||||||  |||| |||||||||  ||||| |||| || |||||   |||||| ||||      
T  16943228 gcccaaacca-ctaaatctagtttccaccatcttttctactataggtactaccccaactctctccctaatattgtaatgtctaattttatctcgtctagt 16943130  T
Q  261 cttaccacacattcaacacaa 281  Q
    |||| ||| ||| ||||||||    
T  16943129 cttatcacgcatccaacacaa 16943109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 7921892 - 7921837
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 213  Q
    |||| ||||||||  ||||||||||||||||| ||||||||| ||||||| |||||    
T  7921892 catgtccaaaccacataaacctagtttccaccatcttttctactataggttttacc 7921837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 8343070 - 8343149
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 224  Q
    |||| |||| || ||||||||  ||| |||| ||||||||||||| ||||||||| || |||||||||| |||| |||||    
T  8343070 ggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaacactcta 8343149  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 22090170 - 22090088
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  22090170 tacgggtcttctccctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct 22090088  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 32231179 - 32231265
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| |||| |||| |||   ||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  32231179 catgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 32231265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 38877478 - 38877652
Alignment:
Q  65 tttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgccc 164  Q
    |||| |||||| |||||||| || ||||||| ||   ||||| ||||||||  | ||  ||||||||| |||||| ||| ||||||||| || |||||      
T  38877478 ttttcctaggtcttcctctgcctatagtgatttg---actacactccatctagtctaccctccttgctgcaaaatctacaggtcatctctctacatgctt 38877574  T
Q  165 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||| |||| || | |||  ||  |||||||||| |||| || || | |||||||||  |||||||||||||||||||    
T  38877575 aaaccacctaagccgaatttttacaatcttttctatgatagatgctaacccaactctct--ctaatgttgtcatttctaa 38877652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 8342997 - 8343046
Alignment:
Q  46 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||| |||||||| ||| ||||||||||| ||||||| |||||||||||    
T  8342997 ttaattgtttctcttatagtttttctaggtcttcctctatctctagtgat 8343046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 43375829 - 43375889
Alignment:
Q  183 ttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||||| | ||||||| ||||| |||||||||  ||||| |||||||||||||    
T  43375829 ttccaccgtcttttcaactataggt-ttaccccaactctcttcctaatattgtcatttctaa 43375889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 8671992 - 8671891
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    ||||| || |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||  ||||||| |||||||     
T  8671992 tacggatcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctc--tctaatggtgtcattc 8671895  T
Q  241 ctaa 244  Q
    ||||    
T  8671894 ctaa 8671891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 10272427 - 10272375
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||||||| |||| |||||||||| |||| ||  ||||||||||    
T  10272427 ttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgat 10272375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 13827948 - 13827992
Alignment:
Q  164 caaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    ||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  13827948 caaaccacctaaccctagtttccaccatcttttctactataggtg 13827992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 39422287 - 39422390
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 277  Q
    |||||||| ||  ||||||||| |||| |||||||  ||||||||| |||||| |||||||||||||   |||||| | ||| | ||||||||||  |||    
T  39422287 ctagtttctactatcttttctactatatgtgttactccaactctct-tctaatattgtcatttctaattctatctcatataatcctaccacacatctaac 39422385  T
Q  278 acaac 282  Q
    |||||    
T  39422386 acaac 39422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 51602130 - 51602058
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 213  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| ||||    
T  51602130 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 51602058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 52442781 - 52442853
Alignment:
Q  210 tacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||| ||||||||| || |||||| |||||||||| | |||||  ||||  |||||||||||| |||||||||    
T  52442781 taccccaactctctctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaac 52442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 33709981 - 33709895
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||    
T  33709981 catgcctaaaccacctaaacctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgttgccatttctaa 33709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 272
Target Start/End: Complemental strand, 54470373 - 54470150
Alignment:
Q  46 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 145  Q
    ||||||| |||||| ||| ||||||| ||| ||| | || ||||||| || ||   ||||| |||||| |||||||  |||||| ||||| ||| |||      
T  54470373 ttaatagattctcttatagtttttcttggtcttcttttgcctctagtaatttg---actactctccatttgatttactctccttactacataatttacat 54470277  T
Q  146 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaac 245  Q
    ||| |||| || |||||||||||||  |||  |||||||||||| ||||||||| |||||||| |||| ||||||||| ||||||||||| ||||| ||     
T  54470276 gtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctctctctaatgttgttatttcaaat 54470177  T
Q  246 cgtatctcttctaagcttaccacacat 272  Q
    | |||| | ||||  ||||||||||||    
T  54470176 catatcccatctagtcttaccacacat 54470150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 282
Target Start/End: Complemental strand, 49987485 - 49987361
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    |||| |||||||| |||| |||| |||||||| ||||||||| ||||||||| |||   |||||||||||||||||||||||||||| | ||||   |||    
T  49987485 catgaccaaaccacctaagcctattttccaccatcttttctactataggtgtgacccagactctctatctaatgttgtcatttctaatcctatcatgtct 49987386  T
Q  258 aagcttaccacacattcaacacaac 282  Q
    |  ||||| | ||||||||||||||    
T  49987385 agtcttactaaacattcaacacaac 49987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 51252686 - 51252807
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    |||||||| |||| |||| ||||||||||||| ||||||||| || ||||| |||| ||||||||  |||||||| ||||||||||| | |||||| |||    
T  51252686 catgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaactctc--tctaatgtagtcatttctaatcctatctcgtct 51252783  T
Q  258 aagcttaccacacattcaacacaa 281  Q
    |  ||||| ||||||  |||||||    
T  51252784 agtcttacgacacatctaacacaa 51252807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 10775667 - 10775733
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  10775667 ctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaa 10775733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 44047573 - 44047659
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||||||| |||| ||||| ||| |||  |||||||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  44047573 catgtccaaaccacctaagcctagattctaccaccttttctactataggtgctaccccaactctctctctaatgttgtcatttctaa 44047659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 53707868 - 53707770
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| |||||||    
T  53707868 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctttctaatggtgtcatt 53707770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 56375364 - 56375223
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||  |||| |||  ||||||||||||||||| |||| | ||||||| ||||||| |||||||     
T  56375364 tacgggtcttctctctacatgcccaaaccatctaagcctgttttctaccaacttttctattataggtgctacccctactctctctctaatggtgtcattc 56375265  T
Q  241 ctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||| | |||||  ||||  |||||||| ||| |||| ||||    
T  56375264 ctaatcttatcttgtctagtcttaccactcatccaacgcaac 56375223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 25257793 - 25257890
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||| ||||||| ||||  |||| ||| ||| |||||| |||| ||||||||||||||||||||  ||||||||||||||||||||    
T  25257793 ggtcttctctctacatgctcaaaccacctaagtctagcttctaccatcttttatattgtaggtgttacctcaactctc--tctaatgttgtcatttctaa 25257890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 13805377 - 13805507
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| |||||||||||||   || |  |||||| |||| ||  |||||||||||||||| |    
T  13805377 tttcttcatagtttctcttatagtttttctaggttttcctctgcctctagtgatctg---acaatcctccatgtgatctagtctccttgctacaaaatct 13805473  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaa 175  Q
    |  |||| |||| || ||| ||||||||| ||||    
T  13805474 aaaggtcttctctctacatacccaaaccacctaa 13805507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 31960022 - 31960125
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  31960022 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 31960121  T
Q  241 ctaa 244  Q
    ||||    
T  31960122 ctaa 31960125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 48174301 - 48174404
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || |||||||||| || |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| |||||||     
T  48174301 tacgggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctaatggtgtcattc 48174400  T
Q  241 ctaa 244  Q
    ||||    
T  48174401 ctaa 48174404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 52569723 - 52569826
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  52569723 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 52569822  T
Q  241 ctaa 244  Q
    ||||    
T  52569823 ctaa 52569826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 37797909 - 37797823
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| ||||||||||||    
T  37797909 catgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggtgtcatttctaa 37797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 45569120 - 45569174
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||    
T  45569120 ttttcttaatagtttctcttataatgtttctaggtcttcctctgcctctagtgat 45569174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 17900517 - 17900413
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 277  Q
    |||||||| ||||||||||||| |||||||| |||| ||||||  | |||||||| |||||||||||   |||| | ||||  |||||||||||| ||||    
T  17900517 ctagtttctaccgtcttttctactataggtgctaccccaactccgtctctaatgtcgtcatttctaattttatcccatctagtcttaccacacatccaac 17900418  T
Q  278 acaac 282  Q
     ||||    
T  17900417 gcaac 17900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 38570972 - 38571095
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 257  Q
    ||||||||||||| |||| ||||||||||||  |||||| || |||||||| | || || |||||| || |||||||||||||| || | |||||  |||    
T  38570972 catgcccaaaccacctaagcctagtttccactatcttttgtactataggtgcttccccagctctctctcaaatgttgtcatttccaatcctatcttgtct 38571071  T
Q  258 aagcttaccacacattcaacacaac 282  Q
     ||  |||||||||| |||||||||    
T  38571072 -agtgtaccacacatccaacacaac 38571095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 49987578 - 49987526
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtga 94  Q
    |||||||||||||||||| ||| ||||||||||| |||||||| |||||||||    
T  49987578 tttcttaatagtttctcttatagtttttctaggtcttcctctgcctctagtga 49987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 10209141 - 10209009
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||| ||  |||||| ||| |||||  || |||| |||| || ||||||||||||||||||   |||||||  || ||||||||| |||||||    
T  10209141 ctccatctgatctactctccttactaaaaaattcacaggtcttctcgctacatgcccaaaccaactaagtttagtttctgccatcttttctactataggt 10209042  T
Q  208 gttacctcaactctctatctaatgttgtcatttctaa 244  Q
      |||| ||||||    ||||||||||||||||||||    
T  10209041 tctaccccaactc----tctaatgttgtcatttctaa 10209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 20999034 - 20998955
Alignment:
Q  193 ttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacat 272  Q
    ||||||| ||||||||||||| |||||| ||||||||| || |||||||||| | |||||| ||||  ||||| ||||||    
T  20999034 ttttctagtataggtgttaccccaactccctatctaatattatcatttctaatcctatctcgtctagtcttacaacacat 20998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 31403250 - 31403369
Alignment:
Q  166 aaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctat----ctaatgttgtcatttctaaccgtatctcttctaagc 261  Q
    ||||| |||| ||||||||||||| | ||||||| |||||||| |||| ||||||| | |    ||||||||||||||||||| | |||| | ||||| |    
T  31403250 aaccacctaagcctagtttccaccat-ttttctactataggtgctaccccaactctatctgtctctaatgttgtcatttctaatcctatcccgtctaatc 31403348  T
Q  262 ttaccacacattcaacacaac 282  Q
    | |||||||||||||| ||||    
T  31403349 tcaccacacattcaactcaac 31403369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 47147543 - 47147453
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctaca 135  Q
    ||||||||||||||||   ||| ||||||||||| |||||||| |||||||||||   | ||||| ||||||||||||||  |||||| |||||    
T  47147543 tttcttaatagtttcttctatagtttttctaggtcttcctctgcctctagtgatc---cgactactctccatctgatttactctccttactaca 47147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 33227283 - 33227185
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||||||| |||| || ||||||||||| | |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  33227283 tacgggtcttctctctacatgcccaaacaatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 33227185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 34233142 - 34233192
Alignment:
Q  48 aatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||||||||||    
T  34233142 aatagtttctctgatagtttttctaggttttcctctgcctctagtgatctg 34233192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 43070014 - 43070113
Alignment:
Q  179 tagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 278  Q
    ||||||||||| || |||||| |||||| | |||||||||||    |||||||||||||||||||| | ||||   ||||| |||||||||||| ||||     
T  43070014 tagtttccaccatcatttctactataggcgctacctcaactc----tctaatgttgtcatttctaatcctatcctgtctaatcttaccacacatccaacc 43070109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 50662437 - 50662322
Alignment:
Q  165 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 264  Q
    |||||| |||| |||| |||||||| ||||||||| |||||||||| ||  ||||||||  |||||| ||||||||| || | |||||| | ||  ||||    
T  50662437 aaaccacctaagcctactttccaccatcttttctactataggtgttgcccaaactctct--ctaatgctgtcatttccaatcctatctcatatagtctta 50662340  T
Q  265 ccacacattcaacacaac 282  Q
    |||||||| | |||||||    
T  50662339 ccacacatcctacacaac 50662322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 45423650 - 45423552
Alignment:
Q  180 agtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacac 279  Q
    |||||| ||| |||||||||||||||||| |||||||||||    | ||||||||||||||||||   |||| | ||||  |||||||||||  ||||||    
T  45423650 agtttctaccatcttttctattataggtgctacctcaactc----tataatgttgtcatttctaattctatcccgtctagtcttaccacacaaccaacac 45423555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 50680789 - 50680672
Alignment:
Q  165 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 264  Q
    |||||| |||| |||| |||||||| ||||||| | |||||||||| ||  |||||||| ||||||||||| ||||| || | ||| || | ||  |||     
T  50680789 aaaccacctaagcctattttccaccatcttttcaactataggtgttgccctaactctctctctaatgttgttatttccaatcctatgtcatatagtcttg 50680690  T
Q  265 ccacacattcaacacaac 282  Q
    | ||||||||||||||||    
T  50680689 ctacacattcaacacaac 50680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 50471596 - 50471499
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || |||||||||||||  ||||||||||||||||| ||||||||| |||  ||| |||| | | ||||  |||||||||||||| |||||    
T  50471596 ggtcttctctctacatgcccaaaccacttaaacctagtttccaccatcttttctactattagtgctaccccgagtctc--tctaatgttgtcatctctaa 50471499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 53540460 - 53540404
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||| ||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||    
T  53540460 tttcctaatagtttatcttatagtttttctaggtcttcctctgcctctagtgatctg 53540404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 28236240 - 28236156
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| |||| ||||||||  |||||||| |||||||| |||| | ||||||  ||||||| ||||||| ||||    
T  28236240 catgcccaaaccatctaagcctattttccaccaacttttctactataggtgctacccccactctc--tctaatggtgtcattcctaa 28236156  T

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Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 28497596 - 28497459
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||| ||  |||||| ||||| ||| |||  ||| |||| || ||||||||||||| |||| |||  |||||||  ||||||||| || ||||    
T  28497596 ctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggt 28497498  T
Q  208 gttacctcaa--ctctctatctaatgttgtcatttctaa 244  Q
    | |||| |||  |||||| ||| ||||||||||||||||    
T  28497497 gctaccccaactctctctctctgatgttgtcatttctaa 28497459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 31459087 - 31459024
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct 221  Q
    ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||||| |||||    
T  31459087 catgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcgactct 31459024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 33191056 - 33191159
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||| | ||||  ||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  33191056 tacgggtcttctctctacatgcccaaacaatctaagtctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 33191155  T
Q  241 ctaa 244  Q
    ||||    
T  33191156 ctaa 33191159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 44360124 - 44360016
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctct----atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacatt 273  Q
    |||||||| ||| ||||||||| |||||||| |||| |||||||||    ||||||| |||||||||||||   ||||||  |||  | ||||||||||     
T  44360124 ctagtttctaccatcttttctactataggtgataccccaactctctctccatctaatattgtcatttctaattctatctcgcctagtcctaccacacatc 44360025  T
Q  274 caacacaac 282  Q
    |||||||||    
T  44360024 caacacaac 44360016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 46715563 - 46715678
Alignment:
Q  124 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||||||||| |||  ||  ||| |||| || |||||||| |||| |||| ||||||||||||| |||||||||  |||||||    |||  ||||||    
T  46715563 ctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtg----ctc-tctctct 46715657  T
Q  224 atctaatgttgtcatttctaa 244  Q
     ||||||||||||||||||||    
T  46715658 ctctaatgttgtcatttctaa 46715678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 7682021 - 7682075
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||| ||||||||||| ||| |||||| |||| |||||||| ||||||||||    
T  7682021 ttttcttgatagtttctcttatagtttttccaggtcttcctctgcctctagtgat 7682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 43433998 - 43433916
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  43433998 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct 43433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 47265410 - 47265508
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||| ||| |||| || |||||||||| || ||||||||| |||| ||   |||||||| ||||||||||||| | ||||||| | ||||| |||||||    
T  47265410 tacgtgtcttctctctacatgcccaaatcatctaaacctattttctactaccttttctactataggtgttacccccactctctctataatggtgtcatt 47265508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 33225945 - 33225978
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggt 75  Q
    |||||||||||||||||| |||||||||||||||    
T  33225945 tttcttaatagtttctcttataatttttctaggt 33225978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 38865758 - 38865803
Alignment:
Q  47 taatagtttctctcataatttttctaggtgttcctctgtctctagt 92  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||    
T  38865758 taatagtttctctcatagtttttctacgtcttcctatgtctctagt 38865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 2588970 - 2588914
Alignment:
Q  226 ctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    ||||||||||||||||||| | |||| ||||||  |||||||||||| |||| ||||    
T  2588970 ctaatgttgtcatttctaatcctatcccttctagtcttaccacacatccaacgcaac 2588914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 34233291 - 34233382
Alignment:
Q  193 ttttctattataggtgttacctcaactctctatct--aatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    ||||||| |||||||| || | |||||||||||||  ||||||||| ||||||| | |||| | ||||  |||| ||||||| |||||||||    
T  34233291 ttttctactataggtgctatcccaactctctatctctaatgttgtcgtttctaatcctatcacatctagtcttatcacacatccaacacaac 34233382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 35555873 - 35555937
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||||||||| ||||  |||||||| ||| ||||||||| |||||||| ||||  ||||||||    
T  35555873 atgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacccgaactctct 35555937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 37488261 - 37488205
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||||||||| ||| ||||||||||| | |||||| || | ||||||||    
T  37488261 tttcttaatagtttctcttatagtttttctaggtctacctctgcctatggtgatctg 37488205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 37773659 - 37773731
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 213  Q
    |||||||| |||  || ||||||||||||| |||| |||| |||| |||| |||||||| |||||||| ||||    
T  37773659 tacgggtcgtctatctacatgcccaaaccatctaagcctattttctaccgacttttctactataggtgctacc 37773731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 41192920 - 41192828
Alignment:
Q  131 ctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||| ||| ||| |||| |||| || ||||| |||| || ||||  |||||||||||| ||||||||| | |||||| |||| |||||||||    
T  41192920 ctacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaactctct 41192828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 48622751 - 48622852
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||| |||| |||| | ||||||  ||||||| |||||||     
T  48622751 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatgggtgctacccccactctc--tctaatggtgtcattc 48622848  T
Q  241 ctaa 244  Q
    ||||    
T  48622849 ctaa 48622852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 7359371 - 7359570
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatg 140  Q
    |||||| |||||||||||| ||  ||||||||||  |||||||| |||||||||| ||   ||||  ||||||||||| ||  |||||| ||||| |||     
T  7359371 ttttctaaatagtttctcttatggtttttctaggctttcctctgcctctagtgatatg---actatcctccatctgatctactctccttactacagaatc 7359467  T
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||   || |||| || |||||| |||||| ||||||||| |||||||| | ||||||| |||||||||||||| |||||||| |||||  |||||||||    
T  7359468 tacatatcttctctctacatgcc-aaaccacctaaacctattttccaccatattttctactataggtgttacctgaactctctctctaacattgtcattt 7359566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 14749476 - 14749269
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 142  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||| || ||||||| ||   ||| | |||||||||||  |  |||||| | ||| |||  |    
T  14749476 ttcttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttg---actcccctccatctgatcgactctccttacaacagaatcca 14749380  T
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 242  Q
    | |||| |||| || |||| |||||||| ||||  |||||||| |||   ||||||| |||||||| |||  ||||||||| ||||||||| ||||||||    
T  14749379 caggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttcatttct 14749280  T
Q  243 aaccgtatctc 253  Q
    || | ||||||    
T  14749279 aatcctatctc 14749269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 31636033 - 31636225
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 142  Q
    ||||| ||||||||||| ||| ||||||||| | |||| || ||||||||||| ||   ||| | | |||||| || ||  |||||| |||||| ||  |    
T  31636033 ttcttgatagtttctctaatagtttttctagatcttcccctatctctagtgatttg---actccccaccatctaatctactctccttactacaacatcca 31636129  T
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||| |||| || ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||| ||  ||||||| ||||||||    
T  31636130 cgggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttc--tctaatgctgtcattt 31636225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 15489604 - 15489802
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| ||  ||||||||||| |||||||| ||||||||||    ||||||  |||||||| || ||  ||||||  |||||||| |    
T  15489604 tttcttaatagtttctcttattgtttttctaggtcttcctctgcctctagtgat---tcaactatcctccatctaatctactctccttaatacaaaatct 15489700  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||   || |||| || ||||||||||||| |||| |  |||||| ||| |||||||||  ||||||  |||| ||||||||| |||||| || |||| ||    
T  15489701 acaaatcttctctctacatgcccaaaccatctaagctgagtttcaaccatcttttctacaataggtactaccccaactctctctctaatcttatcatgtc 15489800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 43475347 - 43475247
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||| ||  |||||| |||||| || ||| |||| |||| ||| || ||||||||| |||| ||||||||||||| ||||||||| |||||||    
T  43475347 ctccatctgatctactctccttactacaacatctacaggtcttctctctgaatacccaaaccacctaagcctagtttccaccatcttttctactataggt 43475248  T
Q  208 g 208  Q
    |    
T  43475247 g 43475247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 2075682 - 2075785
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| | || |||  |||||||| | ||||||||||| | ||||||| |||||||||||||||     
T  2075682 tacgggtcttctctctacatgcccaaaccatctaagcctattgtctaccaacttttctactgtaggtgttacccccactctctctctaatgttgtcattc 2075781  T
Q  241 ctaa 244  Q
    ||||    
T  2075782 ctaa 2075785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 2713113 - 2712936
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 142  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||| |||||||||| ||   |||   ||||||||||| ||  ||||||  |||| |||  |    
T  2713113 ttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttg---actctcctccatctgatctactctccttcatacagaatcca 2713017  T
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    | |||| |||| || ||||||||||||| ||||  ||||| || ||| ||||||  | |||||||| |||| |||||||||    
T  2713016 caggtcttctctctacatgcccaaaccacctaagtctagtctctaccatcttttagactataggtgctaccccaactctct 2712936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 32516606 - 32516491
Alignment:
Q  165 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 264  Q
    |||||| |||| |||| |||||||| ||||||||| |||| |||||||  |||||||||  |||||||||||||||||||   ||||   ||||  ||||    
T  32516606 aaaccacctaagcctattttccaccatcttttctactataagtgttactccaactctct--ctaatgttgtcatttctaagtctatcctgtctagtctta 32516509  T
Q  265 ccacacattcaacacaac 282  Q
    |||||||| |||||||||    
T  32516508 ccacacatccaacacaac 32516491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 33667286 - 33667189
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||    ||||||||||||||||||    
T  33667286 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctc--gttaatgttgtcatttctaa 33667189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 4496458 - 4496355
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||| | |||||||     
T  4496458 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccagcttttctactataggtgctacccccactctctctctaaaggtgtcattc 4496359  T
Q  241 ctaa 244  Q
    ||||    
T  4496358 ctaa 4496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 42199456 - 42199302
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    ||||| |||||||| ||| ||| ||||||||||| || ||||  | |||||||| ||   ||||| |||||| |||| ||  |||||| ||||| ||| |    
T  42199456 tttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttg---actactctccatgtgatctactctccttactacagaatct 42199360  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttcta 199  Q
    ||  ||| |||| || ||||||||||||| ||||  |||||||||||| |||||||||    
T  42199359 acatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 42199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 24178584 - 24178486
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    |||||||| |||| |  ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  24178584 tacgggtcttctctccacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 24178486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 6889163 - 6888931
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||||||||  |||||||  ||| |||| | ||   ||||  |||||||| ||||||  ||||| | ||| |||      
T  6889163 tttcctaatagtttctcttatagtttttctaggccttcctcttcctcaagtggtttg---actatcctccatctaatttattgtccttaccacataatcc 6889067  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||  ||| |||| || |||| ||||||||  ||| |||| |||||||| |||||||   |||| ||| |||| ||||||| | | |||| ||||||||||    
T  6889066 acaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatattgtcatttc 6888967  T
Q  242 taaccgtatctcttctaagcttaccacacattcaac 277  Q
    ||| | |||||| ||||  |||||||||||| ||||    
T  6888966 taatcatatctcatctagtcttaccacacatccaac 6888931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 9235217 - 9235163
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    ||||||||||||||||||  || ||||||||||| |||||||| |||||||||||||    
T  9235217 tttcttaatagtttctct--tagtttttctaggtcttcctctgcctctagtgatctg 9235163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 18351134 - 18351215
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||||||| |||| ||||||||| ||| | ||||||| |||||||| |||| ||||| | | || |||||||||||||    
T  18351134 atgcccaaaccacctaagcctagtttctaccatattttctactataggtgctaccccaactatatgtccaatgttgtcattt 18351215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 43558053 - 43558133
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaa--ctctctatctaatgttgtca 237  Q
    |||||||||||| |||| | ||||||||||| ||||||||||||||| || ||||  ||  |||||| |||||||||||||    
T  43558053 atgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctaccctaactctctctctctaatgttgtca 43558133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 30588505 - 30588396
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 258  Q
    ||||||||||||  |||||||| |||||||| ||||||||||||||  ||||||   |||||    |||||| ||||||||||||| | |||||| | |     
T  30588505 atgcccaaaccacttaaacctattttccaccatcttttctattatacatgttactctaactc----tctaatattgtcatttctaatcatatctcatttg 30588410  T
Q  259 agcttaccacacat 272  Q
    | ||||||||||||    
T  30588409 atcttaccacacat 30588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 34194724 - 34194845
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 258  Q
    |||||||||||| |||  ||| ||||||||| |||||| | |||||||||||| | ||||||||  |||||||||  ||||||||| | ||||   ||||    
T  34194724 atgcccaaaccacctaggcctggtttccaccatcttttatgttataggtgttatcccaactctc--tctaatgtttacatttctaatcctatcctgtcta 34194821  T
Q  259 agcttaccacacattcaacacaac 282  Q
       ||||||||||| |||||||||    
T  34194822 gttttaccacacatccaacacaac 34194845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 1275338 - 1275236
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    ||||| || |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  1275338 tacggatcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc-ccactctctctctaatggtgtcattc 1275240  T
Q  241 ctaa 244  Q
    ||||    
T  1275239 ctaa 1275236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 11002648 - 11002732
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| ||||  |||||||| ||| | ||||||| | |||||| ||||  |||||||  ||||||||||||||||||||    
T  11002648 catgcccaaaccacctaagtctagtttctaccatgttttctactgtaggtgctacccgaactctc--tctaatgttgtcatttctaa 11002732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 3775178 - 3775232
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||||| ||| ||| ||||||||||| ||| |||| ||||||||||    
T  3775178 ttttcttaatagtttatcttatagtttttctaggtcttcttctgcctctagtgat 3775232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5305811 - 5305753
Alignment:
Q  40 attttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||| | ||||||||||  ||| ||||||||||| |||||||| |||||||||||||    
T  5305811 attttcatgatagtttctcatatagtttttctaggtcttcctctgcctctagtgatctg 5305753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 34273097 - 34273019
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||| |||| || ||||||||||||| |||| |||| |||| |||  ||||||||||||||||| |||| | |||||||    
T  34273097 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgctacccccactctct 34273019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 278
Target Start/End: Original strand, 4026527 - 4026679
Alignment:
Q  125 tccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 224  Q
    ||||| ||||| ||| ||| ||||  ||| || |||| |||||||| ||||  |||||||||||| |||||| || | || |||||||| |||||||||     
T  4026527 tccttactacagaatctacaggtctcctctctacatgtccaaaccacctaagactagtttccaccatcttttttactttacgtgttaccccaactctctc 4026626  T
Q  225 tctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 278  Q
    | | ||||| || ||| ||| | |||||| ||||  |||||||||||| |||||    
T  4026627 t-tcatgttctcgtttttaatcttatctcatctagtcttaccacacatacaaca 4026679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 9917562 - 9917615
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||| |||||||||||| ||| |||||||||||  |||||||||||| |||||    
T  9917562 tttctaaatagtttctctaatagtttttctaggtcatcctctgtctcttgtgat 9917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 12576972 - 12577025
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||||||||||||| |||  || ||||||||||| |||||||| ||||||||||    
T  12576972 tttcttaatagtttatcttgtagtttttctaggtcttcctctgcctctagtgat 12577025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 21952512 - 21952284
Alignment:
Q  57 tctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcact 156  Q
    ||||||| ||||||||||| |||| ||  |||||||||| ||   ||| | ||||||||||| ||| |||||| ||| | |||  || || | |||| ||    
T  21952512 tctcatagtttttctaggtcttcccctacctctagtgatttg---actcccctccatctgatctattctccttactatagaatccacaggacttctctct 21952416  T
Q  157 gcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgt----tacctcaactctctatct--aatgttgtcatttctaaccgtat 250  Q
     |||| |||||||| || |  ||||||||  || ||||||||| |||||||||    |||| |||| |||| |||  |||| |||||||||||| | |||    
T  21952415 acatgtccaaaccacctgagtctagtttctgccatcttttctactataggtgtgtgttaccccaaccctctctctttaatgctgtcatttctaatcttat 21952316  T
Q  251 ctcttctaagcttaccacacattcaacacaac 282  Q
    ||| ||||  |||||||||||| |||| ||||    
T  21952315 ctcgtctagtcttaccacacatgcaacgcaac 21952284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 6788237 - 6788181
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||| |||||||| || | ||| ||||||||||| |||||||| |||||||||||||    
T  6788237 tttcctaatagttcctttgatagtttttctaggtcttcctctgcctctagtgatctg 6788181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 12492592 - 12492698
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatta---taggtgttacctcaactctctatctaatgttgtca 237  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||   |||||| |||| | ||||||| ||||||| |||||    
T  12492592 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatagtaggtgctacccccactctctctctaatggtgtca 12492691  T
Q  238 tttctaa 244  Q
    || ||||    
T  12492692 ttcctaa 12492698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 33006664 - 33006595
Alignment:
Q  211 acctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||||||||||||  ||||||||||||||| |||   |||||| ||||| ||||  ||||||||||||||||    
T  33006664 acctcaactctct--ctaatgttgtcatttttaattttatctcgtctaatcttagaacacattcaacacaac 33006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 273
Target Start/End: Original strand, 39600793 - 39601021
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| ||| ||||||||||| |||||||  |||| |  |||||   ||||  ||| ||||||| ||  ||||| |||||| ||| |    
T  39600793 tttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctg---actatcctcgatctgatctactctcctcgctacagaatct 39600889  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    || |||| ||||  | |||||| |||||| |||| | |  |||||||| ||||||||| |||||||  |||| ||||||||| |||||||||||||||||    
T  39600890 acaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactctctctctaatgttgtcatttc 39600989  T
Q  242 taaccgtatctcttctaagcttaccacacatt 273  Q
    ||| | |||| | ||||  |||||||||||||    
T  39600990 taatcttatcccatctagtcttaccacacatt 39601021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 19737104 - 19736929
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||| ||  || ||| |||||| || ||| |||| |||| |||||||| ||||||| ||||||||| |||| ||| ||||||||| |||||||    
T  19737104 ctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggt 19737005  T
Q  208 g-ttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    | |  || ||||||||| ||||||| | ||| |||||| |||||| | ||||  |||||||| ||| |||||||||    
T  19737004 gctgcccccaactctctctctaatgatttcacttctaatcgtatcccgtctagtcttaccactcatccaacacaac 19736929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 19758007 - 19757832
Alignment:
Q  108 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||| ||  || ||| |||||| || ||| |||| |||| |||||||| ||||||| ||||||||| |||| ||| ||||||||| |||||||    
T  19758007 ctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggt 19757908  T
Q  208 g-ttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    | |  || ||||||||| ||||||| | ||| |||||| |||||||| | ||  |||||||| ||| |||||||||    
T  19757907 gctgcccccaactctctctctaatgatttcacttctaatcgtatctcgtgtagtcttaccactcatccaacacaac 19757832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 282
Target Start/End: Original strand, 36820152 - 36820308
Alignment:
Q  124 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    |||||| ||||| ||| || ||||| ||||  | |||| | |||||| |||| ||||||||||||| ||||| ||| |||||||| |||| ||||||||     
T  36820152 ctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgctaccccaactctc- 36820250  T
Q  224 atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
     |||||||| ||||||||||| | |||||| ||||  |||||||||||| |||| ||||    
T  36820251 -tctaatgtcgtcatttctaatcctatctcgtctagtcttaccacacatccaacgcaac 36820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 49503766 - 49503889
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| ||||| |||||||| ||||||| ||||||| | ||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctgaactctctctctaatggtgtcattcccaa 49503865  T
Q  245 ccgtatctcttctaagcttaccac 268  Q
     | |||||| ||||  ||||||||    
T  49503866 tcctatctcgtctagtcttaccac 49503889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 47233804 - 47233907
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || |||| |||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| | ||||| ||||||| ||||||||    
T  47233804 tacgggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccattctctctctaatggtgtcattt 47233903  T
Q  241 ctaa 244  Q
    ||||    
T  47233904 ctaa 47233907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 42510128 - 42510289
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| |||| |||||||| ||| ||||||||||| ||||| || |||||||||||||   ||||  ||||||||||| ||  |||||| | ||||||| |    
T  42510128 tttcctaatggtttctctgatagtttttctaggtcttcctttgcctctagtgatctg---actatcctccatctgatctactctccttaccacaaaatct 42510224  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    |  |||| |||  || |||| |||||||| |||| |||| |||||||  ||||||||| ||||||||    
T  42510225 ataggtcttct--ctacatgtccaaaccacctaagcctattttccactatcttttctactataggtg 42510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 54128435 - 54128354
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||| |||| |||| ||||||| |||||||    
T  54128435 catgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaacactctctctaatggtgtcatt 54128354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 29600957 - 29600861
Alignment:
Q  158 catgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctc 253  Q
    ||||||||||||| ||||| |||| |||| ||| |||||| || |||| | |||||  ||||||||| |||||||||||||||||||| | ||||||    
T  29600957 catgcccaaaccatctaaaacctattttctaccatcttttttactataagcgttacgacaactctctctctaatgttgtcatttctaatcatatctc 29600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 21200718 - 21200564
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    ||||| |||||||| ||| ||| ||||||||||| |||||||  | |||||||| ||   ||||| |||||| |||| ||  |||||| || || ||| |    
T  21200718 tttctaaatagtttgtctaatagtttttctaggtcttcctctccccctagtgatttg---actactctccatgtgatctactctccttactgcagaatct 21200622  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttcta 199  Q
    ||  ||| |||| || ||||||||||||| ||||  |||||||||||| |||||||||    
T  21200621 acatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 21200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 33755453 - 33755508
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatc 96  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||||| |||||||||||    
T  33755453 ttttcctaatagtttctcttatagtttttctaggttttcctctgcctctagtgatc 33755508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 52138870 - 52138771
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  52138870 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 52138771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 3987100 - 3987018
Alignment:
Q  162 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||| || ||| | |||||||||||    
T  3987100 cccaaaccacctaagtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaa 3987018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 26388538 - 26388452
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||| || ||||||||| |||| ||| ||||||||||||||||||  | ||||||||| | ||||||| | | ||||||||    
T  26388538 catgcccaaatcacctaaacctattttctaccatcttttctattataggtgccatctcaactctatgtctaatggtttaatttctaa 26388452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 50249421 - 50249355
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||||| ||||||||| |||| | | |||| ||||||||| ||||||||| ||||||||||    
T  50249421 ctagtttccaccatcttttctactatacgcgctaccccaactctctctctaatgttatcatttctaa 50249355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 31261054 - 31261107
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||||||    
T  31261054 tttcttgatagtttctcttatagtttttctaggtcttcctctgcctctagtgat 31261107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 40982066 - 40982013
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||||||||||| |||| ||| ||||||||||| ||||| |||||||||||||    
T  40982066 tttcttaatagttactcttatagtttttctaggtcttcctttgtctctagtgat 40982013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 50960845 - 50960922
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctc 222  Q
    |||| |||| || ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||| ||||||||    
T  50960845 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaactctc 50960922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 26490372 - 26490309
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct 221  Q
    |||| |||||||| |||| |||| |||| ||| ||||||||| |||||||| ||||||||||||    
T  26490372 catgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaactct 26490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 28245511 - 28245408
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||  |||| || ||||||||||||| ||||  ||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  28245511 tacgggttttctctctacatgcccaaaccatctaagtctattttctaccaacttttctactataggtgctacccccactctctctctaatgatgtcattc 28245412  T
Q  241 ctaa 244  Q
    ||||    
T  28245411 ctaa 28245408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 40116585 - 40116636
Alignment:
Q  47 taatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    ||||||||||||| ||| ||||||||||| ||||| || |||||||||||||    
T  40116585 taatagtttctcttatagtttttctaggtcttcctttggctctagtgatctg 40116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 31454471 - 31454536
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||| ||| ||||||||| |||||||| || | |||| |||| ||||||||||||||||||||    
T  31454471 ctagtttctaccatcttttctactataggtgctaac-caacactctctctaatgttgtcatttctaa 31454536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 45289203 - 45289383
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||  ||| | ||||||| ||||| || ||||   |||||  ||||||||||| ||  || ||| ||||||||| |    
T  45289203 tttcctaatagtttctcttatagttttcatagatcttcctctatctcttgtaatct---aactatcctccatctgatctactcttcttactacaaaatct 45289299  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt--ataggtgttacctcaactctct 223  Q
    ||  ||  |||| || | ||||||||||| |||| |||| |||||||| ||||||||| |  ||||||| |||| |||||||||    
T  45289300 acaagtgttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctactgaataggtgctaccccaactctct 45289383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 46367499 - 46367547
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctct 89  Q
    |||| |||||||||||||| ||||||||| ||||| |||| ||||||||    
T  46367499 tttttttaatagtttctcttataatttttttaggtcttccactgtctct 46367547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 54365087 - 54365143
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||| |||| ||| ||||    
T  54365087 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctcgtggtctg 54365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 55244351 - 55244242
Alignment:
Q  162 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagc 261  Q
    ||||| ||| |||| ||| ||||||||| ||||||||| |||||||||| |  ||||||||||    ||||||||||| |||| | |||| | || |  |    
T  55244351 cccaagccacctaagccttgtttccaccatcttttctactataggtgttgcaccaactctcta----atgttgtcattactaatcttatcccgtcaagtc 55244256  T
Q  262 ttaccacacattca 275  Q
    ||||||||||||||    
T  55244255 ttaccacacattca 55244242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 282
Target Start/End: Original strand, 9556481 - 9556717
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||| ||| ||| |||||| |||| ||||| || |||||||  | ||   ||||  ||||||||||| ||   | ||| ||||| ||| |    
T  9556481 tttcttaatagtttatcttatagtttttcaaggtcttcctttgcctctagtagtttg---actatcctccatctgatatacttttcttactacagaatct 9556577  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||  ||| |||| || |||||| |||||| |||| |||| |||||||| | ||||||| |||| |||||||| ||||| ||| |||||||||||||||||    
T  9556578 acttgtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaactttctctctaatgttgtcatttc 9556676  T
Q  242 taaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    ||| | |||| | ||||| |||||||||||| |||||||||    
T  9556677 taatcatatcccgtctaatcttaccacacatccaacacaac 9556717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 38435122 - 38434922
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    ||||||||||||||||||  || ||||||||||| | |||||| |||||||||||||   ||||  |||||| |||| ||  |||||| ||| |  || |    
T  38435122 tttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctg---actatcctccatatgatctactctccttactaaagcatct 38435026  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaac-ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    ||  ||| ||||  | ||||||||||||| | |||  |||||||||||| ||||||||| |||||||| |||| ||| ||||| ||||||||||||||||    
T  38435025 acaagtcttctctttacatgcccaaaccacccaaagtctagtttccaccatcttttctactataggtgctaccccaattctctctctaatgttgtcattt 38434926  T
Q  241 ctaa 244  Q
    ||||    
T  38434925 ctaa 38434922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 37481729 - 37481928
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||||||||||||| ||| ||||||| ||| ||| |||  ||| ||||||||   |||| | ||||||||||| ||  |||||  |||||||||      
T  37481729 tttcttaatagtttctctaatagtttttcttggtcttcatctacctccagtgatct---aactcccctccatctgatctactctcctaactacaaaattc 37481825  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    ||  ||| |||| || ||||| ||||||| |||| ||||| ||| ||| |||||| || ||||||   |||| ||||||||| |||||||||||||||||    
T  37481826 acaagtcttctctctacatgctcaaaccacctaagcctaggttcaaccatcttttttactataggaactaccccaactctctctctaatgttgtcatttc 37481925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 11412777 - 11412695
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    |||||||||| | |||| |||| |||||||| | ||||||| |||||||| |||| ||||||||| |||||||||||||||||    
T  11412777 atgcccaaacaacctaagcctattttccaccatattttctactataggtgctaccccaactctctctctaatgttgtcatttc 11412695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 43752059 - 43752258
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| ||||||||||| ||||| || ||| |||||||||   | ||  ||||||||||| ||  |||| | ||||| ||| |    
T  43752059 tttcctaatagtttctctgatagtttttctaggtcttcctatgcctccagtgatctg---agtatcctccatctgatctactctccctactacataatct 43752155  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
    |  |||| |||| || |||| ||||| || |||| |||| |||| |||  |||||||| |||||||| |||| ||||||||| |||||| | |||| |||    
T  43752156 ataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactataggtgctaccccaactctctctctaatatggtcagttc 43752255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 18959074 - 18958903
Alignment:
Q  49 atagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtc 148  Q
    |||||||||||  || ||||||||||| |||||||| ||||  |||||||   ||||  ||||||||||| ||  |||||| ||||||||  | | ||||    
T  18959074 atagtttctcttgtagtttttctaggtcttcctctgcctctgatgatctg---actatcctccatctgatctactctccttactacaaaagctgcaggtc 18958978  T
Q  149 atctcactgcatgc----ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaact 219  Q
     |||| ||||||||    |||||||| |||| |||| |||||||| ||||||||| |||||||| |||| |||||    
T  18958977 ttctctctgcatgcccaaccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 13240970 - 13241056
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| ||||||||||||| |||||||||  |||  || |||  ||| ||||| ||||||||||||||||||||    
T  13240970 catgcccaaaccacctaagcctagtttccaccatcttttctaacatacttgctactccaattctctctctaatgttgtcatttctaa 13241056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 33504393 - 33504320
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgat 118  Q
    |||||||||||||||||| ||| ||||||||||| || ||||| |||||||||||||   ||||| |||||||||||    
T  33504393 tttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctg---actaccctccatctgat 33504320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 36039246 - 36039156
Alignment:
Q  192 cttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    ||||||||||||| ||||||| |||||||| | |||||||||||||||| |||   || ||| ||||| ||| |||||||| |||||||||    
T  36039246 cttttctattatatgtgttacgtcaactctttctctaatgttgtcatttataattttaactcatctaaacttgccacacatccaacacaac 36039156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 11017398 - 11017306
Alignment:
Q  131 ctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||||||| |||||||| |||| |  ||| |||||||||  ||| || |||||||||  ||||||||| |||||||| ||||||||||||||    
T  11017398 ctacaaaatctacgggtcttctctccacatacccaaaccacttaagccgagtttccacgatcttttctactataggtgctacctcaactctct 11017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 26784452 - 26784546
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaat 139  Q
    |||||||||||||||||| ||| ||||||||||| || ||||| |||||||||| ||   ||||| |||||||| || ||  |||||| |||||||||    
T  26784452 tttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttg---actaccctccatcttatctaccctccttactacaaaat 26784546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 41763254 - 41763352
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| ||||||| |||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| ||||||| ||||    
T  41763254 ggtcttctctctgcatgtccaaaccacctaagcctattttctaccaacttttctactataggtgttacc-ccactctctctctaatggtgtcattcctaa 41763352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 19024237 - 19024151
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||||||| |||| | || |||||||| ||||||| | |||||||| ||||  ||| |||| ||||||||||||||||||||    
T  19024237 catgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacccaaaccctctctctaatgttgtcatttctaa 19024151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 8180850 - 8180713
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||||| |||| | || |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  8180850 ggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 8180751  T
Q  245 ccgtatctcttctaagcttaccacacattcaacacaac 282  Q
     | ||||   ||||  |||||||| ||| |||||||||    
T  8180750 tcctatcatgtctagtcttaccactcatccaacacaac 8180713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 19235096 - 19235149
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    ||||| |||||||||||| ||| ||||||||||| ||||||| |||||||||||    
T  19235096 tttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgat 19235149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 7615340 - 7615271
Alignment:
Q  172 ctaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttcta 243  Q
    |||| |||||||| |||| ||||||||| ||||||||||||| ||| ||||  |||||||| ||||||||||    
T  7615340 ctaaccctagtttgcaccatcttttctactataggtgttaccccaagtctc--tctaatgtggtcatttcta 7615271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 24583840 - 24583908
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgt 209  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  ||||||||||||||||||    
T  24583840 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgt 24583908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 40759157 - 40759070
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaac-tctctatctaatgttgtcatttctaa 244  Q
    ||||| ||||||| ||||  |||||||||||| | ||||||| |||| ||| || | |||| ||||| ||||||||||||||||||||    
T  40759157 catgcacaaaccacctaactctagtttccaccattttttctactataagtgctaacccaacctctctctctaatgttgtcatttctaa 40759070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 14197387 - 14197437
Alignment:
Q  158 catgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggt 207  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| |||||||    
T  14197387 catgcccaaaccacctaaagcctagtttccaccatcttttctactataggt 14197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 21834567 - 21834486
Alignment:
Q  201 tataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||||||| |||||||||| ||| |  |||||||| |||||||| | |||||| ||||  |||||||||||| |||| ||||    
T  21834567 tataggtgctacctcaactatctttacaatgttgtaatttctaatcttatctcatctagtcttaccacacatccaactcaac 21834486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 23714506 - 23714607
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 277  Q
    |||||||||||| ||||||||| |||| ||| |||| |||  ||||||||||||| ||||||| ||| | ||| |  ||||  |||||||||||| ||||    
T  23714506 ctagtttccaccatcttttctactatatgtgctacc-caa--ctctatctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaac 23714602  T
Q  278 acaac 282  Q
    |||||    
T  23714603 acaac 23714607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 24102178 - 24102279
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 277  Q
    |||||||||||| ||||||||| |||| ||| |||| |||  ||||||||||||| ||||||| ||| | ||| |  ||||  |||||||||||| ||||    
T  24102178 ctagtttccaccatcttttctactatatgtgctacc-caa--ctctatctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaac 24102274  T
Q  278 acaac 282  Q
    |||||    
T  24102275 acaac 24102279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 33287591 - 33287550
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctct 83  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  33287591 tttcttaatagtttctcttatagtttttctaggtcttcctct 33287550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 12141599 - 12141539
Alignment:
Q  160 tgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactc 220  Q
    ||||||||||| |||| |||  |||||||| ||||||||| |||||||| |||| ||||||    
T  12141599 tgcccaaaccacctaagcctcttttccaccatcttttctactataggtgctaccccaactc 12141539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 37452338 - 37452394
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    ||||||||||| | |||| ||||||||||||||| |||||||  |||| ||||||||    
T  37452338 tttcttaatagctcctcttataatttttctaggtcttcctcttcctcttgtgatctg 37452394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 44437834 - 44438001
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 142  Q
    ||||||||||||||||  ||| ||||||||||| | || ||  |||||||||||||   ||| | |||||||| || ||| ||||||  |||| |||  |    
T  44437834 ttcttaatagtttctcatatagtttttctaggtctacccctacctctagtgatctg---actcccctccatctcatctatactccttattacagaatcca 44437930  T
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 213  Q
    |  ||| |||| || |||||| |||||| |||   |||||||| ||| ||||||||| |||||| ||||||    
T  44437931 caagtcttctctctacatgccgaaaccacctatgtctagtttctaccatcttttctactataggggttacc 44438001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 45437000 - 45436956
Alignment:
Q  54 ttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||| ||||||||| ||||| |||||||| |||||||||||||    
T  45437000 ttctcttataatttttataggtcttcctctgcctctagtgatctg 45436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 282
Target Start/End: Complemental strand, 32043759 - 32043523
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 142  Q
    ||||| ||||||||||| ||| ||||| ||||| |||| ||  |||||||||| || || |    ||||||||||| ||| |||||| |||||| ||  |    
T  32043759 ttcttgatagtttctctaatagtttttttaggtcttcccctacctctagtgatttgacaccc---ctccatctgatctattctccttactacaacatcca 32043663  T
Q  143 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 242  Q
    | |||| |||| || |||| |||||||| | ||  |||||||| ||| |||||| || |||||||| |||| ||||||||| ||||||||||||||||||    
T  32043662 caggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgataccccaactctctctctaatgttgtcatttct 32043563  T
Q  243 aaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    ||   |||| | ||||  |||||||||||| |||| ||||    
T  32043562 aattctatcccgtctagtcttaccacacatccaacgcaac 32043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 244
Target Start/End: Complemental strand, 5908812 - 5908613
Alignment:
Q  46 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 145  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||   || |  ||||| ||||| ||  |||||| ||||||||| ||| |    
T  5908812 ttaatagtttctcttatagtttttctaggtcttcctatgtctctagtgatctg---accatcctccacctgatctactctccttactacaaaatctacag 5908716  T
Q  146 gtcatctcactgcatgcccaaaccaactaaacctagtttcc------accgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    ||| |||| ||  ||  |||||||||||||  |||||||||      ||| ||||||||| |||||||  |||| ||||||||| |||||||||||||||    
T  5908715 gtcttctctct--atatccaaaccaactaagtctagtttccatttcaaccatcttttctactataggttctaccccaactctctctctaatgttgtcatt 5908618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 44681288 - 44681378
Alignment:
Q  182 tttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacat 272  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| | |||||| ||||  ||||||||||||    
T  44681288 tttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtcatttctaatcttatctcgtctagtcttaccacacat 44681378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 267
Target Start/End: Original strand, 10080019 - 10080239
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||||||| ||||| ||| ||| ||| ||||||| |||||||  |||||||||| ||   ||| | || ||| |||| ||  |||||| |||||||||      
T  10080019 tttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttg---actccccttcatttgatctactctccttactacaaaatcc 10080115  T
Q  142 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 241  Q
     | |||| |||| || ||||||||||||| | |  ||||||||||||| ||||||||| | ||| || |||||||||||||| |||||||||||||||||    
T  10080116 tcaggtcttctctctacatgcccaaaccatc-aggcctagtttccaccatcttttctact-tagatgctacctcaactctctctctaatgttgtcatttc 10080213  T
Q  242 taaccgtatctcttctaagcttacca 267  Q
    ||| | |||||| ||||  |||||||    
T  10080214 taatcttatctcgtctagtcttacca 10080239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 9695688 - 9695602
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| || |||||||||| ||||||||| |||||||| |||| ||| | ||| | ||||||||||||||||||    
T  9695688 catgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaaatatctctataatgttgtcatttctaa 9695602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 13171875 - 13171960
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||||| |||| | || |||||||| ||||||||| |||||||| | || ||||||||| |||||| |||||||||||||    
T  13171875 atgcccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaa 13171960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 11733784 - 11733718
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||||||| ||| |||||| |||||||||| | ||||||| | ||||||||||||||||||||    
T  11733784 ctagtttccaccatctattctatcataggtgttatcccaactctttctctaatgttgtcatttctaa 11733718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 42493536 - 42493611
Alignment:
Q  163 ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| ||||||||||||  ||||||||| ||||||||||||| ||||||||  || |||||||||||||    
T  42493536 ccaaaccacctaagcctagtttccacaatcttttctactataggtgttaccccaactctc--tccaatgttgtcattt 42493611  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 4011253 - 4011204
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctag 91  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  4011253 tttcttaatagtttctcttatagtttttctaggtcttcctctgtctctag 4011204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 41444551 - 41444612
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaact 219  Q
    |||| |||||||| |||||||||||||||||| ||||||||| |||||||| |||| |||||    
T  41444551 catgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 2518623 - 2518730
Alignment:
Q  164 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctt 263  Q
    ||||||| ||||||||| |||||||| ||||||||| |  ||||| |||| ||| | ||| |||||| ||||||||||||| | |||||| ||||  |||    
T  2518623 caaaccacctaaacctattttccaccatcttttctacttgaggtgctaccccaattttctctctaat-ttgtcatttctaatcctatctcatctagtctt 2518721  T
Q  264 accacacat 272  Q
    |||||||||    
T  2518722 accacacat 2518730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 16252937 - 16252868
Alignment:
Q  211 acctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||||||||||||  |||||||||||||||||||   |||||| ||||| |||||||||||| |||||||||    
T  16252937 acctcaactctct--ctaatgttgtcatttctaattttatctcatctaatcttaccacacatccaacacaac 16252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 30113423 - 30113503
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 239  Q
    ||||||||||||| |||||||| |||| ||| ||||||||| |||| |||||||| | ||||||| ||||||  |||||||    
T  30113423 atgcccaaaccaattaaacctattttctaccatcttttctactatatgtgttaccccgactctctctctaataatgtcatt 30113503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 36545223 - 36545080
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaa--ctctctatctaatgttgtcat 238  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | |  |||||| ||||||| ||||||    
T  36545223 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctctaatggtgtcat 36545124  T
Q  239 ttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    | |||| | ||||   ||||  |||||||| ||| |||||||||    
T  36545123 tcctaatcctatcatgtctagtcttaccactcatccaacacaac 36545080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 36565449 - 36565552
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||  |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  36565449 tacgggtattctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 36565548  T
Q  241 ctaa 244  Q
    ||||    
T  36565549 ctaa 36565552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 35914713 - 35914838
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 141  Q
    |||| ||||||||||||| ||| |||||||| || ||||||||||||||| ||||||   ||||  ||||||||||  ||  |||||||||| ||||| |    
T  35914713 tttcctaatagtttctcttatagtttttctatgtcttcctctgtctctagggatctg---actatcctccatctgacctactctccttgctataaaatct 35914809  T
Q  142 acgggtcatctcactgcatgcccaaacca 170  Q
    |  |||| |||| || | |||||||||||    
T  35914810 ataggtcttctctctacgtgcccaaacca 35914838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 39051195 - 39051113
Alignment:
Q  162 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||| ||||||| ||||||  || ||||||| || |||||||||| | ||||||||| || ||| |||||||||||||    
T  39051195 cccaaaccacctaaaccgagtttctgccatcttttcaatgataggtgttatcccaactctctctcgaatattgtcatttctaa 39051113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 16705918 - 16705861
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    ||||||||||||||||||| | ||| ||| ||||| ||||| ||||||||||||||||    
T  16705918 ttttcttaatagtttctcttacaatatttttaggtcttcctttgtctctagtgatctg 16705861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 28300380 - 28300461
Alignment:
Q  201 tataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 282  Q
    |||||||||||| |||||| ||| |  ||||||||||||||||| | |||||| ||||  ||||| |||||| |||||||||    
T  28300380 tataggtgttacgtcaactatctctacaatgttgtcatttctaatcttatctcatctagtcttactacacatccaacacaac 28300461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 35602050 - 35601992
Alignment:
Q  184 tccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||| |||||| |||||||||||||||||||  ||||| |||||| |||||||||||||    
T  35602050 tccaccatcttttttattataggtgttacctca--tctctctctaatattgtcatttctaa 35601992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 45512607 - 45512660
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||| ||||||||||    
T  45512607 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctagtgat 45512660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 5127382 - 5127442
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaa 102  Q
    |||||||||||||||||| ||| ||||||||||  | |||||| |||||||||||| ||||    
T  5127382 tttcttaatagtttctcttatagtttttctaggcctacctctgcctctagtgatctagcaa 5127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 35643718 - 35643774
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||| ||||||| ||| ||||||||||| |||||||| ||||||| |||||    
T  35643718 tttcttaataatttctcttatagtttttctaggtcttcctctgcctctagtaatctg 35643774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 36069676 - 36069576
Alignment:
Q  179 tagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 278  Q
    ||||||||||| ||| || ||||||||||  ||| ||||||||||  ||||||||||| ||||||| | |||| | ||||  |||||||||||| |||||    
T  36069676 tagtttccaccatctattttattataggttctac-tcaactctct--ctaatgttgtcgtttctaatcttatcccgtctagtcttaccacacatccaaca 36069580  T
Q  279 caac 282  Q
    ||||    
T  36069579 caac 36069576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 36395161 - 36395261
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttcta 243  Q
    |||| |||| || ||||||||||||| ||||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| |||    
T  36395161 ggtcttctctctacatgcccaaaccatctaaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattccta 36395260  T
Q  244 a 244  Q
    |    
T  36395261 a 36395261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 2216457 - 2216402
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    ||||||||||||||||| ||  ||||||||||| |||||||  |||||||||||||    
T  2216457 ttcttaatagtttctcttatgttttttctaggtcttcctctacctctagtgatctg 2216402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 25985556 - 25985492
Alignment:
Q  178 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||||||| ||| ||||||||| |||||||| |||| |||||||||  ||||||||||| |||||||    
T  25985556 ctagtttctaccatcttttctactataggtgctaccccaactctct--ctaatgttgtcgtttctaa 25985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 2796614 - 2796528
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| |||| |||| |||  |||||||| |||||| | |||| | ||||||| ||||||| ||||||| ||||    
T  2796614 catgcccaaaccatctaagcctattttctaccaacttttctactataggcgctacccccactctctctctaatggtgtcattcctaa 2796528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 7046391 - 7046305
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    ||||||||||||| |||| || || ||||||| |||||||||  || |||| ||||    |||||| ||||||||||||||||||||    
T  7046391 catgcccaaaccagctaagccgaggttccaccatcttttctacgattggtgctacccagcctctctctctaatgttgtcatttctaa 7046305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 18474185 - 18474235
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    ||||| |||||||||||| ||||||||||||| || |||||| ||||||||    
T  18474185 catgctcaaaccaactaagcctagtttccaccatcatttctactataggtg 18474235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 24399902 - 24399951
Alignment:
Q  43 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagt 92  Q
    ||||||||||||||||| |||||||||||| || || ||||| |||||||    
T  24399902 ttcttaatagtttctcttataatttttctaagttttgctctgcctctagt 24399951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 29700332 - 29700267
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 224  Q
    |||||||||||| |||| || | ||||| || ||||||||| |||||||| |||| ||||||||||    
T  29700332 atgcccaaaccacctaagccaactttcctccatcttttctactataggtgctaccccaactctcta 29700267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 30748527 - 30748397
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||||||||||||| |||| ||| | ||||||| ||||||||| ||  ||||  ||| ||||||||  | ||||||||||||||||||    
T  30748527 ggtcttctctctacatgcccaaaccacctaagccttgattccaccatcttttctactactggtgcgaccacaactctc--tgtaatgttgtcatttctaa 30748430  T
Q  245 ccgtatctcttctaagcttaccacacattcaac 277  Q
     | ||||   ||||| || ||||||||| ||||    
T  30748429 tcctatcatgtctaatctaaccacacatccaac 30748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 32931131 - 32931078
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||| ||||||||||||| ||| ||||| ||||| |||||||| ||||||||||    
T  32931131 tttcctaatagtttctctgatagtttttttaggtcttcctctgcctctagtgat 32931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 40813381 - 40813316
Alignment:
Q  158 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  40813381 catgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctct 40813316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 12491346 - 12491418
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 213  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| ||||    
T  12491346 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 12491418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 18125247 - 18125146
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||  ||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||  |||||| ||||||||    
T  18125247 tacgggtcttctctctacatgttcaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct--ctaatggtgtcattt 18125150  T
Q  241 ctaa 244  Q
    ||||    
T  18125149 ctaa 18125146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 38178376 - 38178475
Alignment:
Q  46 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 145  Q
    |||||||||||||| ||| ||||||||||| |||||||  |||||| ||| ||   ||||  ||||||||||| ||  |||||| ||||||||| ||| |    
T  38178376 ttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttg---actatcctccatctgatctactctccttactacaaaatctacag 38178472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 38392005 - 38392057
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtga 94  Q
    ||||||||| |||||||  ||| ||||||||||| ||||||||||| ||||||    
T  38392005 tttcttaatggtttctcatatagtttttctaggtcttcctctgtctatagtga 38392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 41444451 - 41444506
Alignment:
Q  41 ttttcttaatagtttctctcataatttt--tctaggtgttcctctgtctctagtga 94  Q
    ||||||||||||||||||| ||| ||||  ||||||| |||||||| |||||||||    
T  41444451 ttttcttaatagtttctcttatagtttttttctaggtcttcctctgcctctagtga 41444506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 31542 - 31439
Alignment:
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 240  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  31542 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 31443  T
Q  241 ctaa 244  Q
    ||||    
T  31442 ctaa 31439  T

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Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 44080 - 44159
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 224  Q
    |||| |||| || ||||||||||||| |||| |||| ||||| || ||||||||| |||||||| |||| ||||||||||    
T  44080 ggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaactctcta 44159  T

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Target: scaffold0018; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 178532 - 178585
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 95  Q
    |||||||||||||||||| ||| ||||||||||| || ||| | ||||||||||    
T  178532 tttcttaatagtttctcttatagtttttctaggtcttactccgcctctagtgat 178585  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 33084128 - 33083996
Alignment:
Q  145 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||| || ||| ||||||||| ||||  |||||||| ||| |||||||||  ||||||| |||| ||||||||| |||||| | |||||||||||    
T  33084128 ggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaa 33084029  T
Q  245 ccgtatctcttctaagcttaccacacattcaac 277  Q
       |||| | ||||  |||||||||||| ||||    
T  33084028 ttctatcccatctagtcttaccacacatccaac 33083996  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 34617 - 34672
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatct 97  Q
    ||||||||| |||||||| ||| ||||||||||| |||||||| ||||||||||||    
T  34617 tttcttaatggtttctcttatagtttttctaggtcttcctctgcctctagtgatct 34672  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 12134145 - 12134212
Alignment:
Q  177 cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 244  Q
    |||| |||||||| ||||||||| |||||||  |||||||| ||||| |||||| |||||||||||||    
T  12134145 cctattttccaccatcttttctactataggtcgtacctcaattctctctctaatattgtcatttctaa 12134212  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 14389323 - 14389457
Alignment:
Q  85 tctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagttt 184  Q
    ||||||||||||||   ||||  ||||||||||| ||| |||||| ||||||| | ||  |||| |||| || |||| |||||||| ||||   | ||||    
T  14389323 tctctagtgatctg---actatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagttt-gttt 14389418  T
Q  185 ccaccgtcttttctattataggtgttacctcaactctct 223  Q
    ||||| |||||||||  ||||||| ||||||||||||||    
T  14389419 ccaccatcttttctacgataggtgctacctcaactctct 14389457  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 9593820 - 9593861
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctct 83  Q
    |||| ||||||||||||| ||||||||||||||| |||||||    
T  9593820 tttcctaatagtttctcttataatttttctaggtcttcctct 9593861  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 21870299 - 21870364
Alignment:
Q  159 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 224  Q
    |||||||||||| |||| || |||||| ||| ||||||||| || ||||| |||| ||||||||||    
T  21870299 atgcccaaaccacctaagccgagtttctaccatcttttctactacaggtgctaccccaactctcta 21870364  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 6293564 - 6293660
Alignment:
Q  111 catctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    |||||||||||  ||||||  |||| ||| ||| |||  |||| || ||||||||||||| || ||||||||||||||| | |||| || |||||||    
T  6293564 catctgatttactctccttattacataatctacaggtgttctctctacatgcccaaaccacctgaacctagtttccaccatattttgtactataggt 6293660  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 7513614 - 7513666
Alignment:
Q  156 tgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 208  Q
    ||||||||||||||| ||||  |||| ||| ||| ||||||||||||||||||    
T  7513614 tgcatgcccaaaccacctaagtctaggttctaccatcttttctattataggtg 7513666  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8364726 - 8364670
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||||||||| ||| ||||| ||||| ||| |||  |||||||||||||    
T  8364726 tttcttaatagtttctcttatagtttttttaggtcttcatcttcctctagtgatctg 8364670  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 24665981 - 24665818
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctac-aaaatg 140  Q
    ||||||||||||||||||  || || ||||| |  |||||||| |||| ||||||   | |||| ||| |||||||| ||  |||||| |||| |||||     
T  24665981 tttcttaatagtttctcttgtagttattctatgacttcctctgcctctggtgatc---cgactatgcttcatctgatctactctccttactacaaaaatc 24665885  T
Q  141 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 207  Q
    ||| |||| |||| || |||| |||||||| |||| |||| |||| ||| | ||||||| |||||||    
T  24665884 tacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactataggt 24665818  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 33997655 - 33997707
Alignment:
Q  41 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtg 93  Q
    ||||||||||||||||||| ||| |||| | |||| |||||||| ||||||||    
T  33997655 ttttcttaatagtttctcttatagttttccaaggtcttcctctgcctctagtg 33997707  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 45556 - 45611
Alignment:
Q  42 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 98  Q
    |||||||||||||||||| ||| |||| |||||||||| | ||||| ||||||||||    
T  45556 tttcttaatagtttctctgatagtttt-ctaggtgttcttatgtctttagtgatctg 45611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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