View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_6 (Length: 357)
Name: NF9376_low_6
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 39991649 - 39991320
Alignment:
| Q |
21 |
aagggtacctttctaacttcataattcacttatatgagaaaagaactctgcaaaagcaatgannnnnnnnatagggtttggaaatggaaattataaacat |
120 |
Q |
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| T |
39991649 |
aagggtaccttactaacttcataattcactcatatgagaaaagaactctgcaaaagcaatgattttttttatagggtttggaaatggaaattataaacat |
39991550 |
T |
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| Q |
121 |
taattgaacaaaaattataccttttctttctgcatttcttttgcaacaataacacctaaaacaacaaaatctccaacagaaaaaatagtcttgttaagtc |
220 |
Q |
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| T |
39991549 |
taattgaacaaaaattataccttttctttctgcatttcttttgcaacaataacacctaaaacaacaaaatctccaacagaaaaaatagtcttgttaagtc |
39991450 |
T |
|
| Q |
221 |
aaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggttaccaaagtaaacccttcaaggaacaaaggatccaaagataacccca |
320 |
Q |
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| T |
39991449 |
aaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggttaccaaagtaaacccttcaaggaacaaaggatccaaagataacccca |
39991350 |
T |
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| Q |
321 |
catgcacccttgttagaattccaacaccaa |
350 |
Q |
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| T |
39991349 |
catgcacccttgttagaattccaacaccaa |
39991320 |
T |
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