View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9376_low_7 (Length: 354)
Name: NF9376_low_7
Description: NF9376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9376_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 37385951 - 37385676
Alignment:
| Q |
1 |
tttgttatcatagcattgttagttttactttgcattgatcatttgaaagaaaagttgcatatgaaaggtttaaataggaagataataacttccatgtgac |
100 |
Q |
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| T |
37385951 |
tttgttatcatagcattgttagttttactttgcattgatcatttgaaagaaaagttgcatatgaaaggtttaaataggaagataataacctccatgtgac |
37385852 |
T |
|
| Q |
101 |
tattttagacttatatatgttctcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatc |
200 |
Q |
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| T |
37385851 |
tattttagacttatatatgttctcttcaattacacagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaatttcttgctgaactgaaaatc |
37385752 |
T |
|
| Q |
201 |
ttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggtggttg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37385751 |
ttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggttgttg |
37385676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 37217144 - 37217260
Alignment:
| Q |
123 |
tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca |
222 |
Q |
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|||| |||||||||||||| |||||| || |||||||||||||| |||||||| |||||||| ||||||||||| | |||||||| ||||| ||||| | |
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| T |
37217144 |
tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctctctgaactgaaagttttaacaagtgttcatcactgga |
37217243 |
T |
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| Q |
223 |
acctggtaaattttcaa |
239 |
Q |
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| T |
37217244 |
acctggtaaattttcaa |
37217260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 37232075 - 37232193
Alignment:
| Q |
123 |
tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca |
222 |
Q |
| |
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|||| ||||||||||||| |||||| || |||||||||| ||| |||||||| ||||||||| ||||||||||| |||||||||| |||| |||| | |
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| T |
37232075 |
tctttaattacacagaaagttgcaatcaagaagatgaagacgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgttcgtcacttaa |
37232174 |
T |
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| Q |
223 |
acctggtaaattttcaaac |
241 |
Q |
| |
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||||||||||||||||||| |
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| T |
37232175 |
acctggtaaattttcaaac |
37232193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 37223144 - 37223253
Alignment:
| Q |
123 |
tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca |
222 |
Q |
| |
|
|||| |||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| ||| | | |
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| T |
37223144 |
tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccgga |
37223243 |
T |
|
| Q |
223 |
acctggtaaa |
232 |
Q |
| |
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|||||||||| |
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|
| T |
37223244 |
acctggtaaa |
37223253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 37197993 - 37198055
Alignment:
| Q |
128 |
aattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctga |
190 |
Q |
| |
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||||||||||||| ||||||||||||||||| | ||| | ||||||| |||||||||||||| |
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| T |
37197993 |
aattacacagaaagctgcaataaaaaagatggacatgaaagcaacaaaagaatttcttgctga |
37198055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 37385640 - 37385606
Alignment:
| Q |
304 |
ttgaacatgtataggtacacttgattggatattgt |
338 |
Q |
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| T |
37385640 |
ttgaacatgtataggtacacttgattggatattgt |
37385606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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