View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_high_4 (Length: 330)
Name: NF9377_high_4
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 2420163 - 2420471
Alignment:
| Q |
9 |
tggtggtctataagaaaacaacacatatgtatggttgcttgcttgtgtggaatgtggatgcatgaataatgaagagaattaatgataccttttggaacta |
108 |
Q |
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| T |
2420163 |
tggtggtctataagaaaacaacacatatgtatggttgcttgcttgtgtggaatgtggatgcatgaataatgaagagaattaatgataccttttggaacta |
2420262 |
T |
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| Q |
109 |
acnnnnnnnnncgacgtacgattgaatattcgagatcc-taatctatatttatggatcttgcatattggcgaagggttatgaacagaagtcgcataaaga |
207 |
Q |
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| T |
2420263 |
acaaaaaaaaacgacgtacgattgaatattcgagatcccttatctatagtcatggatcttgcatattggcaaagggttatgaacagaagtagcataaaga |
2420362 |
T |
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| Q |
208 |
aaggctttccatgttgctttctttagtgttctacgttaagtgtcattttctcttgaccaatctttgggataacactgaataagtaagcaaatgatacgat |
307 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2420363 |
aaggcttttcatcttgctttctttagtgttctacgttaagtgtcattttctcttgaccaatctttgggataacactgaataagtaagcaaatgatacgat |
2420462 |
T |
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| Q |
308 |
agtaataat |
316 |
Q |
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||||||||| |
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| T |
2420463 |
agtaataat |
2420471 |
T |
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