View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9377_high_9 (Length: 269)
Name: NF9377_high_9
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_high_9 |
 | |
|
| [»] scaffold0996 (1 HSPs) |
| | |
|
| [»] scaffold0810 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 52744558 - 52744354
Alignment:
| Q |
1 |
tatgcccccgaaaatataaaactacagcatccaataatccaaaattgggttaagacaagaacaagatacatgcattatttatttatttttgaacggacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52744558 |
tatgcccccgaaaatataaaactacagcatccaataatccaaaattgggttaagacaagaacaagatacatgcattatttatttatttttgaacggacat |
52744459 |
T |
|
| Q |
101 |
gcattatctttatcgtacactatattgttgaaacttaatttattatttcggcagtatgaagtatcattctatcgactgtgaattcgatttatatatagct |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52744458 |
gcattatctttatcatacactatattgttgaaacttaatttattattccggcagtatgaagtatcattctatcgactgtgaattcgatttatatatagct |
52744359 |
T |
|
| Q |
201 |
acata |
205 |
Q |
| |
|
||||| |
|
|
| T |
52744358 |
acata |
52744354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 1477 - 1520
Alignment:
| Q |
213 |
gaacaaaggttatattaagccatttcattcataattaaggagta |
256 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
1477 |
gaacaaaggctatattaagtcatttcattcataattaaggagta |
1520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 4369 - 4336
Alignment:
| Q |
218 |
aaggttatattaagccatttcattcataattaag |
251 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
4369 |
aaggctatattaagccatttcattcataattaag |
4336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 25425868 - 25425901
Alignment:
| Q |
218 |
aaggttatattaagccatttcattcataattaag |
251 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
25425868 |
aaggctatattaagccatttcattcataattaag |
25425901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University