View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9377_low_11 (Length: 393)
Name: NF9377_low_11
Description: NF9377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9377_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 2069388 - 2069760
Alignment:
| Q |
1 |
cgaaacacaatgaccaaaataaattgcccaaaactgaaaaagaaattacacagattcaattaacaaaatgatggttaatataaagaaataaaaattagaa |
100 |
Q |
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| T |
2069388 |
cgaaacgcaatgaccaaaataaattgcccaaaactgaaaaagaaattacacagattcaattaacaaaatgatggttaatataaagaaataaaaattagaa |
2069487 |
T |
|
| Q |
101 |
ctttgaagattcacaactcagattcaacacaatacagagattcaatgtataacacaagaatgaataagaaaaaaggacaacagaatcacacgagcttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2069488 |
ctttgaagattcacaactcagattcaacacaatacagaaattcaatgtataacacaagaatgaataagaaaaaaggacaacagaatcacacgagcttgaa |
2069587 |
T |
|
| Q |
201 |
gaagaatcgcgaagactctaaggaaccacatgcagaagcaggttgggtcgtttcttccaaacacaccgtcacgaagtaacggcgttgtggctgacaaaga |
300 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2069588 |
gaagaattgagaagactctaaggaaccacatgcagaagcaggttgggtcgtttcttccaaaaacaccctcacgaagtaatggcgttgtggctgacaaaga |
2069687 |
T |
|
| Q |
301 |
agaaagtttcgtgagagtagaacaaaccaaagttgtctcagattaaccaaacagagtcgaagaatgaagcaag |
373 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2069688 |
agaaagtttcgtgagagtagaacaaaccaaagttgtctcagattaaccaaacagagtcgaagaacgaagcaag |
2069760 |
T |
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